Analysis of interatomic Contacts of Structural Units in PDB entry:
7SL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SL9 entry

There are 2 chains in PDB entry 7SL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6THR 543
B
 GLN 3SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7SL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 34Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
68 73Right-handed alpha
Helix 4
AA4
A
73 82Right-handed alpha
Helix 5
AA5
A
83 86Right-handed 310
Helix 6
AA6
A
87 102Right-handed alpha
Helix 7
AA7
A
103 110Right-handed alpha
Helix 8
AA8
A
118 123Right-handed alpha
Helix 9
AA9
A
125 130Right-handed alpha
Helix 10
AB1
A
131 159Right-handed alpha
Helix 11
AB2
A
163 175Right-handed alpha
Helix 12
AB3
A
186 212Right-handed alpha
Helix 13
AB4
A
213 224Right-handed alpha
Helix 14
AB5
A
241 258Right-handed alpha
Helix 15
AB6
A
260 263Right-handed 310
Helix 16
AB7
A
264 269Right-handed alpha
Helix 17
AB8
A
272 305Right-handed alpha
Helix 18
AB9
A
318 321Right-handed 310
Helix 19
AC1
A
322 331Right-handed alpha
Helix 20
AC2
A
337 369Right-handed alpha
Helix 21
AC3
A
377 386Right-handed alpha
Helix 22
AC4
A
386 403Right-handed alpha
Helix 23
AC5
A
410 419Right-handed alpha
Helix 24
AC6
A
420 433Right-handed alpha
Helix 25
AC7
A
438 463Right-handed alpha
Helix 26
AC8
A
466 471Right-handed alpha
Helix 27
AC9
A
510 516Right-handed alpha
Helix 28
AD1
A
525 533Right-handed alpha
Helix 29
AD2
A
533 543Right-handed alpha
Helix 30
AD3
B
62 66Right-handed 310
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There are 3 sheets in PDB entry 7SL9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
70 74anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
93 96anti-parallel
Strand 3
B
119 120anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
110 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il