Analysis of interatomic Contacts of Structural Units in PDB entry:
7SMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SMI entry

There is 1 chain in PDB entry 7SMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5ILE 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7SMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
37 51Right-handed alpha
Helix 3
AA3
A
65 79Right-handed alpha
Helix 4
AA4
A
81 85Right-handed 310
Helix 5
AA5
A
101 117Right-handed alpha
Helix 6
AA6
A
128 132Right-handed 310
Helix 7
AA7
A
133 140Right-handed alpha
Helix 8
AA8
A
140 151Right-handed alpha
Helix 9
AA9
A
164 172Right-handed alpha
Helix 10
AB1
A
194 205Right-handed alpha
Helix 11
AB2
A
232 249Right-handed alpha
Helix 12
AB3
A
252 263Right-handed alpha
Helix 13
AB4
A
276 294Right-handed alpha
Helix 14
AB5
A
296 308Right-handed alpha
Helix 15
AB6
A
309 311Right-handed 310
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There are 3 sheets in PDB entry 7SMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
18 20anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
55 57parallel
Strand 3
A
86 91parallel
Strand 4
A
121 126parallel
Strand 5
A
154 161parallel
Strand 6
A
181 185parallel
Strand 7
A
208 212parallel
Strand 8
A
269 273parallel
Strand 9
A
22 25parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
97 98anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il