Analysis of interatomic Contacts of Structural Units in PDB entry:
7SMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SMP entry

There are 2 chains in PDB entry 7SMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 283PHE 1210
A
 ALA 282TYR 1211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 7SMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
286 291Right-handed alpha
Helix 2
AA2
B
291 300Right-handed alpha
Helix 3
AA3
B
301 306Right-handed alpha
Helix 4
AA4
B
306 315Right-handed alpha
Helix 5
AA5
B
316 343Right-handed alpha
Helix 6
AA6
B
351 360Right-handed alpha
Helix 7
AA7
B
361 397Right-handed alpha
Helix 8
AA8
B
404 426Right-handed alpha
Helix 9
AA9
B
427 455Right-handed alpha
Helix 10
AB1
B
457 461Right-handed 310
Helix 11
AB2
B
469 477Right-handed alpha
Helix 12
AB3
B
486 499Right-handed alpha
Helix 13
AB4
B
500 508Right-handed 310
Helix 14
AB5
B
513 544Right-handed alpha
Helix 15
AB6
B
551 555Right-handed 310
Helix 16
AB7
B
567 571Right-handed 310
Helix 17
AB8
B
575 579Right-handed 310
Helix 18
AB9
B
591 597Right-handed alpha
Helix 19
AC1
B
599 633Right-handed alpha
Helix 20
AC2
B
639 643Right-handed 310
Helix 21
AC3
B
651 669Right-handed alpha
Helix 22
AC4
B
674 699Right-handed alpha
Helix 23
AC5
B
712 731Right-handed alpha
Helix 24
AC6
B
731 752Right-handed alpha
Helix 25
AC7
B
760 780Right-handed alpha
Helix 26
AC8
B
801 811Right-handed alpha
Helix 27
AC9
B
827 849Right-handed alpha
Helix 28
AD1
B
862 874Right-handed alpha
Helix 29
AD2
B
896 913Right-handed alpha
Helix 30
AD3
B
1034 1045Right-handed alpha
Helix 31
AD4
B
1046 1050Right-handed 310
Helix 32
AD5
B
1064 1079Right-handed alpha
Helix 33
AD6
B
1097 1109Right-handed alpha
Helix 34
AD7
B
1119 1129Right-handed alpha
Helix 35
AD8
B
1136 1142Right-handed alpha
Helix 36
AD9
B
1142 1160Right-handed alpha
Helix 37
AE1
B
1179 1191Right-handed alpha
Helix 38
AE2
A
291 300Right-handed alpha
Helix 39
AE3
A
301 305Right-handed 310
Helix 40
AE4
A
307 315Right-handed alpha
Helix 41
AE5
A
316 344Right-handed alpha
Helix 42
AE6
A
351 359Right-handed alpha
Helix 43
AE7
A
361 398Right-handed alpha
Helix 44
AE8
A
404 427Right-handed alpha
Helix 45
AE9
A
429 454Right-handed alpha
Helix 46
AF1
A
469 476Right-handed alpha
Helix 47
AF2
A
486 499Right-handed alpha
Helix 48
AF3
A
501 506Right-handed alpha
Helix 49
AF4
A
513 542Right-handed alpha
Helix 50
AF5
A
565 570Right-handed 310
Helix 51
AF6
A
591 597Right-handed alpha
Helix 52
AF7
A
599 632Right-handed alpha
Helix 53
AF8
A
639 643Right-handed 310
Helix 54
AF9
A
651 669Right-handed alpha
Helix 55
AG1
A
674 699Right-handed alpha
Helix 56
AG2
A
712 731Right-handed alpha
Helix 57
AG3
A
731 752Right-handed alpha
Helix 58
AG4
A
760 780Right-handed alpha
Helix 59
AG5
A
797 800Right-handed 310
Helix 60
AG6
A
801 811Right-handed alpha
Helix 61
AG7
A
827 849Right-handed alpha
Helix 62
AG8
A
862 874Right-handed alpha
Helix 63
AG9
A
889 893Right-handed 310
Helix 64
AH1
A
896 913Right-handed alpha
Helix 65
AH2
A
1034 1045Right-handed alpha
Helix 66
AH3
A
1061 1063Right-handed 310
Helix 67
AH4
A
1064 1079Right-handed alpha
Helix 68
AH5
A
1097 1109Right-handed alpha
Helix 69
AH6
A
1119 1130Right-handed alpha
Helix 70
AH7
A
1136 1142Right-handed alpha
Helix 71
AH8
A
1142 1160Right-handed alpha
Helix 72
AH9
A
1179 1191Right-handed alpha
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There are 5 sheets in PDB entry 7SMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
791 793first strand
Strand 2
B
818 824parallel
Strand 3
B
854 859parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
883 887first strand
Strand 2
B
916 921parallel
Strand 3
B
1197 1200anti-parallel
Strand 4
B
1165 1169parallel
Strand 5
B
1024 1027parallel
Strand 6
B
1054 1059parallel
Strand 7
B
1085 1089parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1112 1113first strand
Strand 2
B
1134 1135parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 859first strand
Strand 2
A
818 824parallel
Strand 3
A
791 794parallel
Strand 4
A
883 887parallel
Strand 5
A
916 920parallel
Strand 6
A
1197 1200anti-parallel
Strand 7
A
1163 1169parallel
Strand 8
A
1023 1027parallel
Strand 9
A
1055 1059parallel
Strand 10
A
1086 1089parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1112 1113first strand
Strand 2
A
1134 1135parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il