Analysis of interatomic Contacts of Structural Units in PDB entry:
7SNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SNJ entry

There is 1 chain in PDB entry 7SNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 31ARG 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7SNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 51Right-handed 310
Helix 2
AA2
A
52 58Right-handed 310
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
82 93Right-handed alpha
Helix 5
AA5
A
95 100Right-handed alpha
Helix 6
AA6
A
109 112Right-handed 310
Helix 7
AA7
A
113 122Right-handed alpha
Helix 8
AA8
A
148 153Right-handed alpha
Helix 9
AA9
A
181 197Right-handed alpha
Helix 10
AB1
A
220 224Right-handed 310
Helix 11
AB2
A
235 239Right-handed 310
Helix 12
AB3
A
246 251Right-handed alpha
Helix 13
AB4
A
252 255Right-handed 310
Helix 14
AB5
A
272 277Right-handed alpha
Helix 15
AB6
A
283 320Right-handed alpha
Helix 16
AB7
A
339 343Right-handed 310
Helix 17
AB8
A
350 355Right-handed alpha
Helix 18
AB9
A
380 389Right-handed alpha
Helix 19
AC1
A
402 408Right-handed 310
Helix 20
AC2
A
453 457Right-handed 310
Helix 21
AC3
A
496 498Right-handed 310
Helix 22
AC4
A
499 518Right-handed alpha
Helix 23
AC5
A
524 535Right-handed alpha
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There are 3 sheets in PDB entry 7SNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
160 163anti-parallel
Strand 3
A
143 147anti-parallel
Strand 4
A
125 130parallel
Strand 5
A
204 210parallel
Strand 6
A
33 39parallel
Strand 7
A
326 332parallel
Strand 8
A
358 361anti-parallel
Strand 9
A
71 73anti-parallel
Strand 10
A
370 372parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
376 377parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 422first strand
Strand 2
A
434 439anti-parallel
Strand 3
A
442 447anti-parallel
Strand 4
A
477 482anti-parallel
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