Analysis of interatomic Contacts of Structural Units in PDB entry:
7SNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SNV entry

There are 3 chains in PDB entry 7SNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3GLU 457
B
 MET 4ASN 110
C
 PRO 22ALA 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7SNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
42 54Right-handed alpha
Helix 3
AA3
A
62 68Right-handed 310
Helix 4
AA4
A
69 74Right-handed alpha
Helix 5
AA5
A
97 101Right-handed 310
Helix 6
AA6
A
105 114Right-handed alpha
Helix 7
AA7
A
134 139Right-handed alpha
Helix 8
AA8
A
146 156Right-handed alpha
Helix 9
AA9
A
174 188Right-handed alpha
Helix 10
AB1
A
206 226Right-handed alpha
Helix 11
AB2
A
239 253Right-handed alpha
Helix 12
AB3
A
262 266Right-handed alpha
Helix 13
AB4
A
266 281Right-handed alpha
Helix 14
AB5
A
303 315Right-handed alpha
Helix 15
AB6
A
328 344Right-handed alpha
Helix 16
AB7
A
350 354Right-handed 310
Helix 17
AB8
A
376 378Right-handed 310
Helix 18
AB9
A
379 388Right-handed alpha
Helix 19
AC1
A
396 401Right-handed alpha
Helix 20
AC2
A
405 426Right-handed alpha
Helix 21
AC3
A
433 445Right-handed alpha
Helix 22
AC4
A
445 455Right-handed alpha
Helix 23
AC5
B
23 37Right-handed alpha
Helix 24
AC6
B
47 51Right-handed 310
Helix 25
AC7
B
68 83Right-handed alpha
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There are 5 sheets in PDB entry 7SNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 82first strand
Strand 2
A
90 96anti-parallel
Strand 3
A
29 37anti-parallel
Strand 4
A
123 125anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 82first strand
Strand 2
A
90 96anti-parallel
Strand 3
A
29 37anti-parallel
Strand 4
A
127 132anti-parallel
Strand 5
A
301 302parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
391 394parallel
Strand 3
A
368 371parallel
Strand 4
A
318 320parallel
Strand 5
A
283 287parallel
Strand 6
A
257 261parallel
Strand 7
A
230 234parallel
Strand 8
A
192 194parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
359 360anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
40 46anti-parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
99 107anti-parallel
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