Analysis of interatomic Contacts of Structural Units in PDB entry:
7SNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SNW entry

There are 3 chains in PDB entry 7SNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -1LEU 168
B
 MET -1LEU 168
C
 MET -1LEU 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 7SNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed 310
Helix 2
AA2
A
17 25Right-handed alpha
Helix 3
AA3
A
28 38Right-handed alpha
Helix 4
AA4
A
66 78Right-handed alpha
Helix 5
AA5
B
2 7Right-handed 310
Helix 6
AA6
B
17 23Right-handed alpha
Helix 7
AA7
B
28 38Right-handed alpha
Helix 8
AA8
B
66 78Right-handed alpha
Helix 9
AA9
C
2 7Right-handed 310
Helix 10
AB1
C
17 25Right-handed alpha
Helix 11
AB2
C
28 38Right-handed alpha
Helix 12
AB3
C
66 78Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7SNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
87 98anti-parallel
Strand 3
A
51 61anti-parallel
Strand 4
A
41 47anti-parallel
Strand 5
A
8 16anti-parallel
Strand 6
A
158 166anti-parallel
Strand 7
A
149 155anti-parallel
Strand 8
A
136 143anti-parallel
Strand 9
A
124 130anti-parallel
Strand 10
A
114 120anti-parallel
Strand 11
A
104 107anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
87 98anti-parallel
Strand 3
B
51 61anti-parallel
Strand 4
B
41 46anti-parallel
Strand 5
B
8 16anti-parallel
Strand 6
B
158 166anti-parallel
Strand 7
B
149 155anti-parallel
Strand 8
B
136 143anti-parallel
Strand 9
B
124 130anti-parallel
Strand 10
B
114 120anti-parallel
Strand 11
B
104 107anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 84first strand
Strand 2
C
87 98anti-parallel
Strand 3
C
51 61anti-parallel
Strand 4
C
41 47anti-parallel
Strand 5
C
8 16anti-parallel
Strand 6
C
158 166anti-parallel
Strand 7
C
149 155anti-parallel
Strand 8
C
136 143anti-parallel
Strand 9
C
124 130anti-parallel
Strand 10
C
114 120anti-parallel
Strand 11
C
105 107anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il