Analysis of interatomic Contacts of Structural Units in PDB entry:
7SO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SO5 entry

There are 3 chains in PDB entry 7SO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	PRO 222
L	ASP 1	ARG 216
A	LEU 3	LEU 543

There are 33 helices in PDB entry 7SO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	87	91	Right-handed 310
Helix 2	AA2	H	165	167	Right-handed 310
Helix 3	AA3	H	196	198	Right-handed 310
Helix 4	AA4	H	210	213	Right-handed 310
Helix 5	AA5	L	84	88	Right-handed 310
Helix 6	AA6	L	126	131	Right-handed alpha
Helix 7	AA7	L	188	193	Right-handed alpha
Helix 8	AA8	A	5	13	Right-handed alpha
Helix 9	AA9	A	21	36	Right-handed alpha
Helix 10	AB1	A	41	63	Right-handed alpha
Helix 11	AB2	A	68	90	Right-handed alpha
Helix 12	AB3	A	108	122	Right-handed alpha
Helix 13	AB4	A	137	157	Right-handed alpha
Helix 14	AB5	A	168	197	Right-handed alpha
Helix 15	AB6	A	201	215	Right-handed alpha
Helix 16	AB7	A	217	234	Right-handed alpha
Helix 17	AB8	A	243	249	Right-handed alpha
Helix 18	AB9	A	251	261	Right-handed alpha
Helix 19	AC1	A	264	281	Right-handed alpha
Helix 20	AC2	A	308	325	Right-handed alpha
Helix 21	AC3	A	339	352	Right-handed alpha
Helix 22	AC4	A	355	359	Right-handed 310
Helix 23	AC5	A	393	420	Right-handed alpha
Helix 24	AC6	A	423	437	Right-handed alpha
Helix 25	AC7	A	443	451	Right-handed alpha
Helix 26	AC8	A	452	456	Right-handed 310
Helix 27	AC9	A	463	469	Right-handed alpha
Helix 28	AD1	A	470	483	Right-handed alpha
Helix 29	AD2	A	494	499	Right-handed alpha
Helix 30	AD3	A	500	502	Right-handed 310
Helix 31	AD4	A	504	508	Right-handed 310
Helix 32	AD5	A	512	519	Right-handed alpha
Helix 33	AD6	A	523	539	Right-handed alpha

There are 12 sheets in PDB entry 7SO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	8	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	102	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	102	anti-parallel
Strand 4	H	106	112	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	185	194	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	185	194	anti-parallel
Strand 4	H	178	179	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	204	209	anti-parallel
Strand 3	H	214	219	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	50	54	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	134	144	anti-parallel
Strand 3	L	178	187	anti-parallel
Strand 4	L	164	168	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	202	anti-parallel
Strand 4	L	210	215	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	367	368	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	126	131	parallel
Strand 3	A	97	101	parallel
Strand 4	A	282	285	parallel
Strand 5	A	381	389	anti-parallel
Strand 6	A	374	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SO5