Analysis of interatomic Contacts of Structural Units in PDB entry:
7SO7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SO7 entry

There are 3 chains in PDB entry 7SO7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 535
B	MET 1	TYR 538
X	GLU 1	PRO 187

There are 61 helices in PDB entry 7SO7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	41	47	Right-handed alpha
Helix 4	AA4	A	52	63	Right-handed alpha
Helix 5	AA5	A	67	90	Right-handed alpha
Helix 6	AA6	A	108	122	Right-handed alpha
Helix 7	AA7	A	137	156	Right-handed alpha
Helix 8	AA8	A	169	197	Right-handed alpha
Helix 9	AA9	A	201	215	Right-handed alpha
Helix 10	AB1	A	217	220	Right-handed 310
Helix 11	AB2	A	221	235	Right-handed alpha
Helix 12	AB3	A	243	249	Right-handed alpha
Helix 13	AB4	A	251	260	Right-handed alpha
Helix 14	AB5	A	264	281	Right-handed alpha
Helix 15	AB6	A	308	324	Right-handed alpha
Helix 16	AB7	A	334	338	Right-handed 310
Helix 17	AB8	A	339	350	Right-handed alpha
Helix 18	AB9	A	355	359	Right-handed 310
Helix 19	AC1	A	393	419	Right-handed alpha
Helix 20	AC2	A	423	438	Right-handed alpha
Helix 21	AC3	A	443	451	Right-handed alpha
Helix 22	AC4	A	452	454	Right-handed 310
Helix 23	AC5	A	463	470	Right-handed alpha
Helix 24	AC6	A	470	483	Right-handed alpha
Helix 25	AC7	A	494	499	Right-handed alpha
Helix 26	AC8	A	500	502	Right-handed 310
Helix 27	AC9	A	512	517	Right-handed alpha
Helix 28	AD1	A	530	534	Right-handed 310
Helix 29	AD2	B	5	13	Right-handed alpha
Helix 30	AD3	B	21	36	Right-handed alpha
Helix 31	AD4	B	41	63	Right-handed alpha
Helix 32	AD5	B	68	90	Right-handed alpha
Helix 33	AD6	B	108	122	Right-handed alpha
Helix 34	AD7	B	137	156	Right-handed alpha
Helix 35	AD8	B	171	197	Right-handed alpha
Helix 36	AD9	B	201	214	Right-handed alpha
Helix 37	AE1	B	221	234	Right-handed alpha
Helix 38	AE2	B	243	248	Right-handed alpha
Helix 39	AE3	B	251	260	Right-handed alpha
Helix 40	AE4	B	264	281	Right-handed alpha
Helix 41	AE5	B	296	301	Right-handed 310
Helix 42	AE6	B	308	324	Right-handed alpha
Helix 43	AE7	B	334	338	Right-handed 310
Helix 44	AE8	B	339	350	Right-handed alpha
Helix 45	AE9	B	355	359	Right-handed 310
Helix 46	AF1	B	393	419	Right-handed alpha
Helix 47	AF2	B	423	438	Right-handed alpha
Helix 48	AF3	B	443	451	Right-handed alpha
Helix 49	AF4	B	463	470	Right-handed alpha
Helix 50	AF5	B	470	483	Right-handed alpha
Helix 51	AF6	B	494	499	Right-handed alpha
Helix 52	AF7	B	500	502	Right-handed 310
Helix 53	AF8	B	512	517	Right-handed alpha
Helix 54	AF9	X	158	160	Right-handed 310
Helix 55	AG1	Y	87	91	Right-handed 310
Helix 56	AG2	Y	131	136	Right-handed alpha
Helix 57	AG3	Y	190	197	Right-handed alpha
Helix 58	AG4	H	158	160	Right-handed 310
Helix 59	AG5	L	87	91	Right-handed 310
Helix 60	AG6	L	131	136	Right-handed alpha
Helix 61	AG7	L	190	195	Right-handed alpha

There are 29 sheets in PDB entry 7SO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	367	368	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	97	101	parallel
Strand 3	A	282	285	parallel
Strand 4	A	381	389	anti-parallel
Strand 5	A	374	378	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	508	509	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	367	368	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	126	131	parallel
Strand 3	B	97	101	parallel
Strand 4	B	282	285	parallel
Strand 5	B	382	389	anti-parallel
Strand 6	B	374	377	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	3	7	first strand
Strand 2	X	17	25	anti-parallel
Strand 3	X	78	84	anti-parallel
Strand 4	X	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	11	12	first strand
Strand 2	X	109	113	parallel
Strand 3	X	92	98	anti-parallel
Strand 4	X	34	39	anti-parallel
Strand 5	X	45	51	anti-parallel
Strand 6	X	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	122	126	first strand
Strand 2	X	138	147	anti-parallel
Strand 3	X	178	186	anti-parallel
Strand 4	X	166	167	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	122	126	first strand
Strand 2	X	138	147	anti-parallel
Strand 3	X	178	186	anti-parallel
Strand 4	X	171	172	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	153	156	first strand
Strand 2	X	196	202	anti-parallel
Strand 3	X	207	213	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	9	12	first strand
Strand 2	Y	110	114	parallel
Strand 3	Y	92	99	anti-parallel
Strand 4	Y	35	40	anti-parallel
Strand 5	Y	47	52	anti-parallel
Strand 6	Y	59	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	9	12	first strand
Strand 2	Y	110	114	parallel
Strand 3	Y	92	99	anti-parallel
Strand 4	Y	104	106	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	17	22	first strand
Strand 2	Y	78	84	anti-parallel
Strand 3	Y	68	69	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	17	22	first strand
Strand 2	Y	78	84	anti-parallel
Strand 3	Y	72	73	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	123	127	first strand
Strand 2	Y	139	148	anti-parallel
Strand 3	Y	181	189	anti-parallel
Strand 4	Y	168	170	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	123	127	first strand
Strand 2	Y	139	148	anti-parallel
Strand 3	Y	181	189	anti-parallel
Strand 4	Y	174	175	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	162	163	first strand
Strand 2	Y	154	159	anti-parallel
Strand 3	Y	200	206	anti-parallel
Strand 4	Y	209	215	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	139	147	anti-parallel
Strand 3	H	178	185	anti-parallel
Strand 4	H	166	167	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	139	147	anti-parallel
Strand 3	H	178	185	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	156	first strand
Strand 2	H	196	202	anti-parallel
Strand 3	H	207	213	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	110	114	parallel
Strand 3	L	92	98	anti-parallel
Strand 4	L	36	40	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	110	114	parallel
Strand 3	L	92	98	anti-parallel
Strand 4	L	105	106	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	22	first strand
Strand 2	L	78	83	anti-parallel
Strand 3	L	68	73	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	127	first strand
Strand 2	L	140	148	anti-parallel
Strand 3	L	181	188	anti-parallel
Strand 4	L	168	170	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	127	first strand
Strand 2	L	140	148	anti-parallel
Strand 3	L	181	188	anti-parallel
Strand 4	L	174	175	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	203	206	anti-parallel
Strand 3	L	209	212	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	162	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SO7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SO7