Analysis of interatomic Contacts of Structural Units in PDB entry:
7SOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SOV entry

There are 2 chains in PDB entry 7SOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 322PRO 410
B
 A -4 A -1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 7SOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
322 338Right-handed alpha
Helix 2
AA2
A
339 344Right-handed alpha
Helix 3
AA3
A
346 353Right-handed alpha
Helix 4
AA4
A
361 366Right-handed alpha
Helix 5
AA5
A
367 374Right-handed alpha
Helix 6
AA6
A
376 386Right-handed alpha
Helix 7
AA7
A
402 406Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 7SOV.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
396 399anti-parallel
Strand 3
A
390 393anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il