Analysis of interatomic Contacts of Structural Units in PDB entry:
7SQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SQV entry

There are 4 chains in PDB entry 7SQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 64HIS 586
C
 ALA 591ASP 615
B
 THR 45SER 63
D
 GLY 626PHE 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 7SQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 78Right-handed alpha
Helix 2
AA2
A
82 86Right-handed 310
Helix 3
AA3
A
148 153Right-handed 310
Helix 4
AA4
A
154 170Right-handed alpha
Helix 5
AA5
A
171 175Right-handed 310
Helix 6
AA6
A
193 221Right-handed alpha
Helix 7
AA7
A
226 231Right-handed 310
Helix 8
AA8
A
335 351Right-handed alpha
Helix 9
AA9
A
356 364Right-handed alpha
Helix 10
AB1
A
372 374Right-handed 310
Helix 11
AB2
A
375 381Right-handed alpha
Helix 12
AB3
A
394 403Right-handed alpha
Helix 13
AB4
A
422 427Right-handed alpha
Helix 14
AB5
A
427 432Right-handed alpha
Helix 15
AB6
A
448 462Right-handed alpha
Helix 16
AB7
A
465 470Right-handed alpha
Helix 17
AB8
A
500 502Right-handed 310
Helix 18
AB9
A
503 511Right-handed alpha
Helix 19
AC1
A
512 525Right-handed alpha
Helix 20
AC2
A
529 546Right-handed alpha
Helix 21
AC3
A
561 575Right-handed alpha
Helix 22
AC4
C
598 602Right-handed 310
Helix 23
AC5
C
607 611Right-handed 310
Helix 24
AC6
B
48 53Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7SQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
114 123anti-parallel
Strand 4
A
176 182parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
142 145anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
477 490anti-parallel
Strand 3
A
550 560anti-parallel
Strand 4
A
411 417anti-parallel
Strand 5
A
317 328parallel
Strand 6
A
276 292anti-parallel
Strand 7
A
260 269anti-parallel
Strand 8
A
234 241anti-parallel
Strand 9
A
580 581parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
309 310anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il