Analysis of interatomic Contacts of Structural Units in PDB entry:
7SSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SSV entry

There are 6 chains in PDB entry 7SSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 103	THR 491
B	GLY 103	THR 491
C	GLY 103	THR 491
D	GLY 103	THR 491
H	GLN 1	ASP 269
L	LEU 4	SER 216

There are 86 helices in PDB entry 7SSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	119	124	Right-handed alpha
Helix 2	AA2	A	132	137	Right-handed alpha
Helix 3	AA3	A	152	154	Right-handed 310
Helix 4	AA4	A	155	166	Right-handed alpha
Helix 5	AA5	A	176	187	Right-handed alpha
Helix 6	AA6	A	190	202	Right-handed alpha
Helix 7	AA7	A	215	225	Right-handed alpha
Helix 8	AA8	A	231	254	Right-handed alpha
Helix 9	AA9	A	293	317	Right-handed alpha
Helix 10	AB1	A	321	325	Right-handed 310
Helix 11	AB2	A	326	348	Right-handed alpha
Helix 12	AB3	A	361	369	Right-handed alpha
Helix 13	AB4	A	370	380	Right-handed 310
Helix 14	AB5	A	383	391	Right-handed alpha
Helix 15	AB6	A	395	420	Right-handed alpha
Helix 16	AB7	A	430	433	Right-handed 310
Helix 17	AB8	A	434	443	Right-handed alpha
Helix 18	AB9	A	454	474	Right-handed alpha
Helix 19	AC1	A	475	489	Right-handed alpha
Helix 20	AC2	B	118	123	Right-handed alpha
Helix 21	AC3	B	152	155	Right-handed 310
Helix 22	AC4	B	156	166	Right-handed alpha
Helix 23	AC5	B	176	188	Right-handed alpha
Helix 24	AC6	B	190	202	Right-handed alpha
Helix 25	AC7	B	216	225	Right-handed alpha
Helix 26	AC8	B	226	230	Right-handed 310
Helix 27	AC9	B	231	256	Right-handed alpha
Helix 28	AD1	B	293	316	Right-handed alpha
Helix 29	AD2	B	319	326	Right-handed alpha
Helix 30	AD3	B	326	348	Right-handed alpha
Helix 31	AD4	B	361	370	Right-handed alpha
Helix 32	AD5	B	375	380	Right-handed 310
Helix 33	AD6	B	384	394	Right-handed alpha
Helix 34	AD7	B	395	420	Right-handed alpha
Helix 35	AD8	B	430	433	Right-handed 310
Helix 36	AD9	B	434	443	Right-handed alpha
Helix 37	AE1	B	454	474	Right-handed alpha
Helix 38	AE2	B	475	489	Right-handed alpha
Helix 39	AE3	C	119	124	Right-handed alpha
Helix 40	AE4	C	132	137	Right-handed alpha
Helix 41	AE5	C	152	154	Right-handed 310
Helix 42	AE6	C	155	166	Right-handed alpha
Helix 43	AE7	C	176	188	Right-handed alpha
Helix 44	AE8	C	190	202	Right-handed alpha
Helix 45	AE9	C	216	226	Right-handed alpha
Helix 46	AF1	C	230	255	Right-handed alpha
Helix 47	AF2	C	293	316	Right-handed alpha
Helix 48	AF3	C	327	347	Right-handed alpha
Helix 49	AF4	C	361	370	Right-handed alpha
Helix 50	AF5	C	371	380	Right-handed 310
Helix 51	AF6	C	384	394	Right-handed alpha
Helix 52	AF7	C	395	420	Right-handed alpha
Helix 53	AF8	C	430	433	Right-handed 310
Helix 54	AF9	C	434	443	Right-handed alpha
Helix 55	AG1	C	454	474	Right-handed alpha
Helix 56	AG2	C	475	489	Right-handed alpha
Helix 57	AG3	D	119	124	Right-handed alpha
Helix 58	AG4	D	128	131	Right-handed 310
Helix 59	AG5	D	132	137	Right-handed alpha
Helix 60	AG6	D	152	154	Right-handed 310
Helix 61	AG7	D	155	165	Right-handed alpha
Helix 62	AG8	D	176	188	Right-handed alpha
Helix 63	AG9	D	190	202	Right-handed alpha
Helix 64	AH1	D	216	226	Right-handed alpha
Helix 65	AH2	D	230	255	Right-handed alpha
Helix 66	AH3	D	293	316	Right-handed alpha
Helix 67	AH4	D	326	348	Right-handed alpha
Helix 68	AH5	D	361	370	Right-handed alpha
Helix 69	AH6	D	371	372	Right-handed 310
Helix 70	AH7	D	373	377	Right-handed 310
Helix 71	AH8	D	384	393	Right-handed alpha
Helix 72	AH9	D	395	420	Right-handed alpha
Helix 73	AI1	D	430	433	Right-handed 310
Helix 74	AI2	D	434	443	Right-handed alpha
Helix 75	AI3	D	454	474	Right-handed alpha
Helix 76	AI4	D	475	489	Right-handed alpha
Helix 77	AI5	H	63	67	Right-handed 310
Helix 78	AI6	H	86	90	Right-handed 310
Helix 79	AI7	H	120	127	Right-handed alpha
Helix 80	AI8	H	127	133	Right-handed alpha
Helix 81	AI9	H	135	140	Right-handed alpha
Helix 82	AJ1	H	239	241	Right-handed 310
Helix 83	AJ2	L	28	32	Right-handed 310
Helix 84	AJ3	L	80	84	Right-handed 310
Helix 85	AJ4	L	125	131	Right-handed alpha
Helix 86	AJ5	L	185	190	Right-handed alpha

There are 18 sheets in PDB entry 7SSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	118	first strand
Strand 2	A	105	110	anti-parallel
Strand 3	A	147	149	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	107	109	anti-parallel
Strand 3	B	147	148	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	118	first strand
Strand 2	C	105	110	anti-parallel
Strand 3	C	148	149	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	117	118	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	109	110	anti-parallel
Strand 3	D	148	149	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	8	first strand
Strand 2	H	20	25	anti-parallel
Strand 3	H	77	80	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	159	163	parallel
Strand 3	H	91	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	159	163	parallel
Strand 3	H	91	99	anti-parallel
Strand 4	H	151	154	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	172	176	first strand
Strand 2	H	187	197	anti-parallel
Strand 3	H	228	237	anti-parallel
Strand 4	H	216	217	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	172	176	first strand
Strand 2	H	187	197	anti-parallel
Strand 3	H	228	237	anti-parallel
Strand 4	H	221	222	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	246	252	first strand
Strand 2	H	257	263	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	105	110	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	50	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	105	110	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	100	101	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	64	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	67	68	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	134	141	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	163	170	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	149	150	first strand
Strand 2	L	199	201	anti-parallel
Strand 3	L	204	205	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	159	first strand
Strand 2	L	152	154	anti-parallel
Strand 3	L	195	196	anti-parallel
Strand 4	L	209	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SSV