Analysis of interatomic Contacts of Structural Units in PDB entry:
7SSY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SSY entry

There are 4 chains in PDB entry 7SSY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 103THR 491
B
 GLY 103THR 491
C
 GLY 103THR 491
D
 GLY 103THR 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 7SSY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 124Right-handed alpha
Helix 2
AA2
A
135 138Right-handed 310
Helix 3
AA3
A
152 165Right-handed alpha
Helix 4
AA4
A
176 188Right-handed alpha
Helix 5
AA5
A
190 202Right-handed alpha
Helix 6
AA6
A
214 226Right-handed alpha
Helix 7
AA7
A
230 256Right-handed alpha
Helix 8
AA8
A
294 316Right-handed alpha
Helix 9
AA9
A
326 348Right-handed alpha
Helix 10
AB1
A
361 370Right-handed alpha
Helix 11
AB2
A
371 379Right-handed 310
Helix 12
AB3
A
381 394Right-handed alpha
Helix 13
AB4
A
394 420Right-handed alpha
Helix 14
AB5
A
434 443Right-handed alpha
Helix 15
AB6
A
454 474Right-handed alpha
Helix 16
AB7
A
475 489Right-handed alpha
Helix 17
AB8
B
119 124Right-handed alpha
Helix 18
AB9
B
135 138Right-handed 310
Helix 19
AC1
B
152 165Right-handed alpha
Helix 20
AC2
B
176 188Right-handed alpha
Helix 21
AC3
B
190 202Right-handed alpha
Helix 22
AC4
B
214 226Right-handed alpha
Helix 23
AC5
B
230 256Right-handed alpha
Helix 24
AC6
B
294 316Right-handed alpha
Helix 25
AC7
B
326 348Right-handed alpha
Helix 26
AC8
B
361 370Right-handed alpha
Helix 27
AC9
B
371 379Right-handed 310
Helix 28
AD1
B
381 394Right-handed alpha
Helix 29
AD2
B
394 420Right-handed alpha
Helix 30
AD3
B
434 443Right-handed alpha
Helix 31
AD4
B
454 474Right-handed alpha
Helix 32
AD5
B
475 489Right-handed alpha
Helix 33
AD6
C
119 124Right-handed alpha
Helix 34
AD7
C
135 138Right-handed 310
Helix 35
AD8
C
152 165Right-handed alpha
Helix 36
AD9
C
176 188Right-handed alpha
Helix 37
AE1
C
190 202Right-handed alpha
Helix 38
AE2
C
214 226Right-handed alpha
Helix 39
AE3
C
230 256Right-handed alpha
Helix 40
AE4
C
294 316Right-handed alpha
Helix 41
AE5
C
326 348Right-handed alpha
Helix 42
AE6
C
361 370Right-handed alpha
Helix 43
AE7
C
371 379Right-handed 310
Helix 44
AE8
C
381 394Right-handed alpha
Helix 45
AE9
C
394 420Right-handed alpha
Helix 46
AF1
C
434 443Right-handed alpha
Helix 47
AF2
C
454 474Right-handed alpha
Helix 48
AF3
C
475 489Right-handed alpha
Helix 49
AF4
D
119 124Right-handed alpha
Helix 50
AF5
D
135 138Right-handed 310
Helix 51
AF6
D
152 165Right-handed alpha
Helix 52
AF7
D
176 188Right-handed alpha
Helix 53
AF8
D
190 202Right-handed alpha
Helix 54
AF9
D
214 226Right-handed alpha
Helix 55
AG1
D
230 256Right-handed alpha
Helix 56
AG2
D
294 316Right-handed alpha
Helix 57
AG3
D
326 348Right-handed alpha
Helix 58
AG4
D
361 370Right-handed alpha
Helix 59
AG5
D
371 379Right-handed 310
Helix 60
AG6
D
381 394Right-handed alpha
Helix 61
AG7
D
394 420Right-handed alpha
Helix 62
AG8
D
434 443Right-handed alpha
Helix 63
AG9
D
454 474Right-handed alpha
Helix 64
AH1
D
475 489Right-handed alpha
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There are 4 sheets in PDB entry 7SSY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 118first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
146 148parallel
Strand 4
A
140 141anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 118first strand
Strand 2
B
105 110anti-parallel
Strand 3
B
146 148parallel
Strand 4
B
140 141anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 118first strand
Strand 2
C
105 110anti-parallel
Strand 3
C
146 148parallel
Strand 4
C
140 141anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 118first strand
Strand 2
D
105 110anti-parallel
Strand 3
D
146 148parallel
Strand 4
D
140 141anti-parallel
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