Analysis of interatomic Contacts of Structural Units in PDB entry:
7STM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7STM entry

There are 2 chains in PDB entry 7STM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 134LYS 1002
B
 GLN 134LYS 1002
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 7STM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
142 144Right-handed 310
Helix 2
AA2
A
145 155Right-handed alpha
Helix 3
AA3
A
242 246Right-handed 310
Helix 4
AA4
A
254 261Right-handed alpha
Helix 5
AA5
A
274 278Right-handed alpha
Helix 6
AA6
A
288 292Right-handed 310
Helix 7
AA7
A
299 304Right-handed alpha
Helix 8
AA8
A
322 343Right-handed alpha
Helix 9
AA9
A
352 355Right-handed 310
Helix 10
AB1
A
370 381Right-handed alpha
Helix 11
AB2
A
439 450Right-handed alpha
Helix 12
AB3
A
451 457Right-handed alpha
Helix 13
AB4
A
473 485Right-handed alpha
Helix 14
AB5
A
507 532Right-handed alpha
Helix 15
AB6
A
545 550Right-handed alpha
Helix 16
AB7
A
557 569Right-handed alpha
Helix 17
AB8
A
580 590Right-handed alpha
Helix 18
AB9
A
593 598Right-handed alpha
Helix 19
AC1
A
599 603Right-handed 310
Helix 20
AC2
A
604 613Right-handed alpha
Helix 21
AC3
A
636 661Right-handed alpha
Helix 22
AC4
A
662 668Right-handed 310
Helix 23
AC5
A
671 694Right-handed alpha
Helix 24
AC6
A
694 710Right-handed alpha
Helix 25
AC7
A
719 745Right-handed alpha
Helix 26
AC8
A
750 787Right-handed alpha
Helix 27
AC9
A
791 798Right-handed alpha
Helix 28
AD1
A
798 822Right-handed alpha
Helix 29
AD2
A
826 831Right-handed alpha
Helix 30
AD3
A
831 853Right-handed alpha
Helix 31
AD4
A
888 905Right-handed alpha
Helix 32
AD5
A
917 946Right-handed alpha
Helix 33
AD6
A
948 954Right-handed 310
Helix 34
AD7
A
955 1002Right-handed alpha
Helix 35
AD8
B
142 144Right-handed 310
Helix 36
AD9
B
145 155Right-handed alpha
Helix 37
AE1
B
242 246Right-handed 310
Helix 38
AE2
B
254 261Right-handed alpha
Helix 39
AE3
B
274 278Right-handed alpha
Helix 40
AE4
B
288 292Right-handed 310
Helix 41
AE5
B
299 304Right-handed alpha
Helix 42
AE6
B
322 343Right-handed alpha
Helix 43
AE7
B
352 355Right-handed 310
Helix 44
AE8
B
370 381Right-handed alpha
Helix 45
AE9
B
439 450Right-handed alpha
Helix 46
AF1
B
451 457Right-handed alpha
Helix 47
AF2
B
473 485Right-handed alpha
Helix 48
AF3
B
507 532Right-handed alpha
Helix 49
AF4
B
545 550Right-handed alpha
Helix 50
AF5
B
557 569Right-handed alpha
Helix 51
AF6
B
580 590Right-handed alpha
Helix 52
AF7
B
593 598Right-handed alpha
Helix 53
AF8
B
599 603Right-handed 310
Helix 54
AF9
B
604 613Right-handed alpha
Helix 55
AG1
B
636 661Right-handed alpha
Helix 56
AG2
B
662 668Right-handed 310
Helix 57
AG3
B
671 694Right-handed alpha
Helix 58
AG4
B
694 710Right-handed alpha
Helix 59
AG5
B
719 745Right-handed alpha
Helix 60
AG6
B
750 787Right-handed alpha
Helix 61
AG7
B
791 798Right-handed alpha
Helix 62
AG8
B
798 822Right-handed alpha
Helix 63
AG9
B
826 831Right-handed alpha
Helix 64
AH1
B
831 853Right-handed alpha
Helix 65
AH2
B
888 905Right-handed alpha
Helix 66
AH3
B
917 946Right-handed alpha
Helix 67
AH4
B
948 954Right-handed 310
Helix 68
AH5
B
955 1002Right-handed alpha
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There are 6 sheets in PDB entry 7STM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
B
881 882anti-parallel
Strand 3
B
872 875anti-parallel
Strand 4
A
391 392parallel
Strand 5
A
395 396anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
279 285anti-parallel
Strand 3
A
399 406anti-parallel
Strand 4
A
428 435anti-parallel
Strand 5
A
357 363parallel
Strand 6
A
312 318parallel
Strand 7
A
461 465parallel
Strand 8
A
541 544anti-parallel
Strand 9
A
488 497anti-parallel
Strand 10
A
620 631parallel
Strand 11
A
469 470anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 413first strand
Strand 2
A
418 421anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
A
881 882anti-parallel
Strand 3
A
872 875anti-parallel
Strand 4
B
391 392parallel
Strand 5
B
395 396anti-parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 252first strand
Strand 2
B
279 285anti-parallel
Strand 3
B
399 406anti-parallel
Strand 4
B
428 435anti-parallel
Strand 5
B
357 363parallel
Strand 6
B
312 318parallel
Strand 7
B
461 465parallel
Strand 8
B
541 544anti-parallel
Strand 9
B
488 497anti-parallel
Strand 10
B
620 631parallel
Strand 11
B
469 470anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 413first strand
Strand 2
B
418 421anti-parallel
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