Analysis of interatomic Contacts of Structural Units in PDB entry:
7SUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SUD entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7SUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7GLU 2608
A
 GLN 2610ALA 2637
A
 GLN 2639PHE 2644
A
 LEU 2646LEU 2646
A
 GLN 2648MET 4128
C
 ASP 724ILE 732
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are209 helices in PDB entry 7SUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 18Right-handed alpha
Helix 2
AA2
A
27 43Right-handed alpha
Helix 3
AA3
A
49 59Right-handed alpha
Helix 4
AA4
A
64 71Right-handed alpha
Helix 5
AA5
A
78 96Right-handed alpha
Helix 6
AA6
A
104 117Right-handed alpha
Helix 7
AA7
A
120 138Right-handed alpha
Helix 8
AA8
A
148 162Right-handed alpha
Helix 9
AA9
A
168 184Right-handed alpha
Helix 10
AB1
A
185 191Right-handed 310
Helix 11
AB2
A
192 207Right-handed alpha
Helix 12
AB3
A
216 231Right-handed alpha
Helix 13
AB4
A
241 255Right-handed alpha
Helix 14
AB5
A
266 278Right-handed alpha
Helix 15
AB6
A
284 288Right-handed 310
Helix 16
AB7
A
289 301Right-handed alpha
Helix 17
AB8
A
306 328Right-handed alpha
Helix 18
AB9
A
334 345Right-handed alpha
Helix 19
AC1
A
357 369Right-handed alpha
Helix 20
AC2
A
386 397Right-handed alpha
Helix 21
AC3
A
409 422Right-handed alpha
Helix 22
AC4
A
431 445Right-handed alpha
Helix 23
AC5
A
453 470Right-handed alpha
Helix 24
AC6
A
475 491Right-handed alpha
Helix 25
AC7
A
527 536Right-handed alpha
Helix 26
AC8
A
560 577Right-handed alpha
Helix 27
AC9
A
616 634Right-handed alpha
Helix 28
AD1
A
642 644Right-handed 310
Helix 29
AD2
A
645 660Right-handed alpha
Helix 30
AD3
A
665 680Right-handed alpha
Helix 31
AD4
A
681 685Right-handed 310
Helix 32
AD5
A
699 715Right-handed alpha
Helix 33
AD6
A
723 734Right-handed alpha
Helix 34
AD7
A
737 742Right-handed alpha
Helix 35
AD8
A
748 759Right-handed alpha
Helix 36
AD9
A
762 780Right-handed alpha
Helix 37
AE1
A
781 786Right-handed alpha
Helix 38
AE2
A
788 793Right-handed alpha
Helix 39
AE3
A
794 796Right-handed 310
Helix 40
AE4
A
797 802Right-handed alpha
Helix 41
AE5
A
814 822Right-handed alpha
Helix 42
AE6
A
847 862Right-handed alpha
Helix 43
AE7
A
866 871Right-handed 310
Helix 44
AE8
A
879 883Right-handed 310
Helix 45
AE9
A
910 920Right-handed alpha
Helix 46
AF1
A
923 945Right-handed alpha
Helix 47
AF2
A
958 972Right-handed alpha
Helix 48
AF3
A
977 995Right-handed alpha
Helix 49
AF4
A
1003 1018Right-handed alpha
Helix 50
AF5
A
1023 1043Right-handed alpha
Helix 51
AF6
A
1045 1052Right-handed alpha
Helix 52
AF7
A
1055 1068Right-handed alpha
Helix 53
AF8
A
1071 1084Right-handed alpha
Helix 54
AF9
A
1085 1090Right-handed alpha
Helix 55
AG1
A
1092 1114Right-handed alpha
Helix 56
AG2
A
1122 1141Right-handed alpha
Helix 57
AG3
A
1141 1146Right-handed alpha
Helix 58
AG4
A
1164 1175Right-handed alpha
Helix 59
AG5
A
1180 1195Right-handed alpha
Helix 60
AG6
A
1203 1215Right-handed alpha
Helix 61
AG7
A
1216 1225Right-handed alpha
Helix 62
AG8
A
1249 1273Right-handed alpha
Helix 63
AG9
A
1290 1301Right-handed alpha
Helix 64
AH1
A
1307 1312Right-handed alpha
Helix 65
AH2
A
1323 1352Right-handed alpha
Helix 66
AH3
A
1353 1361Right-handed 310
Helix 67
AH4
A
1365 1378Right-handed alpha
Helix 68
AH5
A
1379 1382Right-handed 310
Helix 69
AH6
A
1390 1393Right-handed 310
Helix 70
AH7
A
1394 1406Right-handed alpha
Helix 71
AH8
A
1411 1420Right-handed alpha
Helix 72
AH9
A
1425 1430Right-handed alpha
Helix 73
AI1
A
1431 1434Right-handed 310
Helix 74
AI2
A
1444 1462Right-handed alpha
Helix 75
AI3
A
1463 1468Right-handed alpha
Helix 76
AI4
A
1478 1490Right-handed alpha
Helix 77
AI5
A
1504 1521Right-handed alpha
Helix 78
AI6
A
1524 1533Right-handed alpha
Helix 79
AI7
A
1554 1563Right-handed alpha
Helix 80
AI8
A
1565 1574Right-handed alpha
Helix 81
AI9
A
1574 1583Right-handed alpha
Helix 82
AJ1
A
1589 1607Right-handed alpha
Helix 83
AJ2
A
1614 1623Right-handed alpha
Helix 84
AJ3
A
1638 1653Right-handed alpha
Helix 85
AJ4
A
1667 1678Right-handed alpha
Helix 86
AJ5
A
1695 1700Right-handed 310
Helix 87
AJ6
A
1705 1720Right-handed alpha
Helix 88
AJ7
A
1735 1753Right-handed alpha
Helix 89
AJ8
A
1756 1766Right-handed alpha
Helix 90
AJ9
A
1774 1787Right-handed alpha
Helix 91
AK1
A
1790 1807Right-handed alpha
Helix 92
AK2
A
1812 1822Right-handed alpha
Helix 93
AK3
A
1822 1831Right-handed alpha
Helix 94
AK4
A
1838 1852Right-handed alpha
Helix 95
AK5
A
1862 1883Right-handed alpha
Helix 96
AK6
A
1893 1900Right-handed alpha
Helix 97
AK7
A
1910 1924Right-handed alpha
Helix 98
AK8
A
1933 1953Right-handed alpha
Helix 99
AK9
A
1958 1965Right-handed alpha
Helix 100
AL1
A
1977 1982Right-handed alpha
Helix 101
AL2
A
1997 2013Right-handed alpha
Helix 102
AL3
A
2093 2105Right-handed alpha
Helix 103
AL4
A
2123 2134Right-handed alpha
Helix 104
AL5
A
2139 2153Right-handed alpha
Helix 105
AL6
A
2165 2174Right-handed alpha
Helix 106
AL7
A
2183 2194Right-handed alpha
Helix 107
AL8
A
2201 2204Right-handed 310
Helix 108
AL9
A
2205 2222Right-handed alpha
Helix 109
AM1
A
2227 2245Right-handed alpha
Helix 110
AM2
A
2255 2261Right-handed alpha
Helix 111
AM3
A
2270 2282Right-handed alpha
Helix 112
AM4
A
2295 2305Right-handed alpha
Helix 113
AM5
A
2306 2309Right-handed 310
Helix 114
AM6
A
2312 2333Right-handed alpha
Helix 115
AM7
A
2338 2353Right-handed alpha
Helix 116
AM8
A
2356 2371Right-handed alpha
Helix 117
AM9
A
2372 2377Right-handed 310
Helix 118
AN1
A
2378 2385Right-handed alpha
Helix 119
AN2
A
2391 2404Right-handed alpha
Helix 120
AN3
A
2411 2418Right-handed alpha
Helix 121
AN4
A
2419 2426Right-handed alpha
Helix 122
AN5
A
2428 2443Right-handed alpha
Helix 123
AN6
A
2444 2446Right-handed 310
Helix 124
AN7
A
2447 2456Right-handed alpha
Helix 125
AN8
A
2458 2462Right-handed 310
Helix 126
AN9
A
2466 2484Right-handed alpha
Helix 127
AO1
A
2492 2509Right-handed alpha
Helix 128
AO2
A
2510 2512Right-handed 310
Helix 129
AO3
A
2516 2526Right-handed alpha
Helix 130
AO4
A
2534 2542Right-handed alpha
Helix 131
AO5
A
2543 2546Right-handed 310
Helix 132
AO6
A
2553 2565Right-handed alpha
Helix 133
AO7
A
2580 2584Right-handed 310
Helix 134
AO8
A
2594 2601Right-handed alpha
Helix 135
AO9
A
2787 2799Right-handed alpha
Helix 136
AP1
A
2801 2820Right-handed alpha
Helix 137
AP2
A
2827 2847Right-handed alpha
Helix 138
AP3
A
2851 2861Right-handed alpha
Helix 139
AP4
A
2867 2871Right-handed 310
Helix 140
AP5
A
2872 2884Right-handed alpha
Helix 141
AP6
A
2885 2898Right-handed alpha
Helix 142
AP7
A
2919 2933Right-handed alpha
Helix 143
AP8
A
2935 2946Right-handed alpha
Helix 144
AP9
A
2950 2962Right-handed alpha
Helix 145
AQ1
A
2965 2976Right-handed alpha
Helix 146
AQ2
A
2987 3005Right-handed alpha
Helix 147
AQ3
A
3007 3017Right-handed alpha
Helix 148
AQ4
A
3026 3031Right-handed 310
Helix 149
AQ5
A
3033 3040Right-handed alpha
Helix 150
AQ6
A
3040 3053Right-handed alpha
Helix 151
AQ7
A
3060 3069Right-handed alpha
Helix 152
AQ8
A
3074 3082Right-handed alpha
Helix 153
AQ9
A
3083 3093Right-handed alpha
Helix 154
AR1
A
3095 3116Right-handed alpha
Helix 155
AR2
A
3121 3130Right-handed alpha
Helix 156
AR3
A
3131 3147Right-handed alpha
Helix 157
AR4
A
3148 3152Right-handed 310
Helix 158
AR5
A
3154 3167Right-handed alpha
Helix 159
AR6
A
3175 3196Right-handed alpha
Helix 160
AR7
A
3227 3248Right-handed alpha
Helix 161
AR8
A
3251 3262Right-handed alpha
Helix 162
AR9
A
3269 3288Right-handed alpha
Helix 163
AS1
A
3293 3300Right-handed alpha
Helix 164
AS2
A
3301 3308Right-handed alpha
Helix 165
AS3
A
3311 3319Right-handed alpha
Helix 166
AS4
A
3320 3344Right-handed alpha
Helix 167
AS5
A
3352 3364Right-handed alpha
Helix 168
AS6
A
3370 3392Right-handed alpha
Helix 169
AS7
A
3409 3429Right-handed alpha
Helix 170
AS8
A
3441 3456Right-handed alpha
Helix 171
AS9
A
3465 3475Right-handed alpha
Helix 172
AT1
A
3481 3488Right-handed alpha
Helix 173
AT2
A
3491 3497Right-handed 310
Helix 174
AT3
A
3498 3506Right-handed alpha
Helix 175
AT4
A
3511 3525Right-handed alpha
Helix 176
AT5
A
3526 3528Right-handed 310
Helix 177
AT6
A
3529 3538Right-handed alpha
Helix 178
AT7
A
3545 3563Right-handed alpha
Helix 179
AT8
A
3566 3577Right-handed alpha
Helix 180
AT9
A
3580 3597Right-handed alpha
Helix 181
AU1
A
3603 3618Right-handed alpha
Helix 182
AU2
A
3626 3637Right-handed alpha
Helix 183
AU3
A
3638 3643Right-handed alpha
Helix 184
AU4
A
3657 3674Right-handed alpha
Helix 185
AU5
A
3679 3683Right-handed 310
Helix 186
AU6
A
3684 3689Right-handed alpha
Helix 187
AU7
A
3758 3775Right-handed alpha
Helix 188
AU8
A
3778 3783Right-handed alpha
Helix 189
AU9
A
3812 3820Right-handed alpha
Helix 190
AV1
A
3821 3830Right-handed alpha
Helix 191
AV2
A
3834 3847Right-handed alpha
Helix 192
AV3
A
3851 3853Right-handed 310
Helix 193
AV4
A
3854 3862Right-handed alpha
Helix 194
AV5
A
3863 3874Right-handed alpha
Helix 195
AV6
A
3881 3891Right-handed alpha
Helix 196
AV7
A
3893 3918Right-handed alpha
Helix 197
AV8
A
3924 3926Right-handed 310
Helix 198
AV9
A
3948 3953Right-handed alpha
Helix 199
AW1
A
3964 3970Right-handed alpha
Helix 200
AW2
A
3978 3994Right-handed alpha
Helix 201
AW3
A
3995 4007Right-handed alpha
Helix 202
AW4
A
4012 4022Right-handed alpha
Helix 203
AW5
A
4033 4037Right-handed 310
Helix 204
AW6
A
4042 4053Right-handed alpha
Helix 205
AW7
A
4055 4065Right-handed alpha
Helix 206
AW8
A
4073 4083Right-handed alpha
Helix 207
AW9
A
4099 4112Right-handed alpha
Helix 208
AX1
A
4113 4118Right-handed alpha
Helix 209
AX2
C
725 730Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7SUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 584first strand
Strand 2
A
613 614anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
893 895first strand
Strand 2
A
904 906anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2635 2636first strand
Strand 2
A
2772 2773anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3719 3728first strand
Strand 2
A
3736 3742anti-parallel
Strand 3
A
3748 3754anti-parallel
Strand 4
A
3800 3804anti-parallel
Strand 5
A
3793 3797anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3809 3811first strand
Strand 2
A
3928 3931anti-parallel
Strand 3
A
3937 3939anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il