Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SVA entry

There are 2 chains in PDB entry 7SVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 126CYS 988
B
 U 1 C 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7SVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
170 186Right-handed alpha
Helix 2
AA2
A
248 257Right-handed alpha
Helix 3
AA3
A
264 283Right-handed alpha
Helix 4
AA4
A
338 348Right-handed alpha
Helix 5
AA5
A
357 369Right-handed alpha
Helix 6
AA6
A
460 472Right-handed alpha
Helix 7
AA7
A
474 490Right-handed alpha
Helix 8
AA8
A
494 501Right-handed alpha
Helix 9
AA9
A
565 584Right-handed alpha
Helix 10
AB1
A
602 617Right-handed alpha
Helix 11
AB2
A
637 648Right-handed alpha
Helix 12
AB3
A
658 663Right-handed alpha
Helix 13
AB4
A
665 679Right-handed alpha
Helix 14
AB5
A
688 692Right-handed alpha
Helix 15
AB6
A
770 784Right-handed alpha
Helix 16
AB7
A
801 821Right-handed alpha
Helix 17
AB8
A
903 915Right-handed alpha
Helix 18
AB9
A
928 941Right-handed alpha
Helix 19
AC1
A
942 944Right-handed 310
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There are 8 sheets in PDB entry 7SVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
738 745first strand
Strand 2
A
722 729anti-parallel
Strand 3
A
703 711anti-parallel
Strand 4
A
789 795parallel
Strand 5
A
828 834parallel
Strand 6
A
891 895anti-parallel
Strand 7
A
875 879anti-parallel
Strand 8
A
862 864anti-parallel
Strand 9
A
510 515anti-parallel
Strand 10
A
139 145anti-parallel
Strand 11
A
841 843anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
321 325anti-parallel
Strand 3
A
147 151anti-parallel
Strand 4
A
503 504anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
202 205anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
236 246anti-parallel
Strand 5
A
213 219anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
306 312anti-parallel
Strand 3
A
327 333anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 387first strand
Strand 2
A
371 375anti-parallel
Strand 3
A
447 449anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 394first strand
Strand 2
A
429 432anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
521 522anti-parallel
Strand 3
A
686 687anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
556 559parallel
Strand 3
A
626 630parallel
Strand 4
A
656 657parallel
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