Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SVD entry

There are 2 chains in PDB entry 7SVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 1451
B
 UNK 1UNK 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7SVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
20 28Right-handed alpha
Helix 3
AA3
A
33 37Right-handed 310
Helix 4
AA4
A
41 44Right-handed 310
Helix 5
AA5
A
45 64Right-handed alpha
Helix 6
AA6
A
69 98Right-handed alpha
Helix 7
AA7
A
98 108Right-handed alpha
Helix 8
AA8
A
119 165Right-handed alpha
Helix 9
AA9
A
176 186Right-handed alpha
Helix 10
AB1
A
189 194Right-handed alpha
Helix 11
AB2
A
195 198Right-handed 310
Helix 12
AB3
A
199 217Right-handed alpha
Helix 13
AB4
A
222 250Right-handed alpha
Helix 14
AB5
A
251 267Right-handed alpha
Helix 15
AB6
A
268 276Right-handed alpha
Helix 16
AB7
A
277 313Right-handed alpha
Helix 17
AB8
A
313 329Right-handed alpha
Helix 18
AB9
A
333 352Right-handed alpha
Helix 19
AC1
A
353 376Right-handed alpha
Helix 20
AC2
A
402 409Right-handed alpha
Helix 21
AC3
A
464 472Right-handed alpha
Helix 22
AC4
A
501 508Right-handed alpha
Helix 23
AC5
A
513 524Right-handed alpha
Helix 24
AC6
A
526 531Right-handed alpha
Helix 25
AC7
A
549 564Right-handed alpha
Helix 26
AC8
A
579 591Right-handed alpha
Helix 27
AC9
A
629 634Right-handed alpha
Helix 28
AD1
A
848 854Right-handed alpha
Helix 29
AD2
A
856 883Right-handed alpha
Helix 30
AD3
A
913 927Right-handed alpha
Helix 31
AD4
A
930 957Right-handed alpha
Helix 32
AD5
A
960 966Right-handed alpha
Helix 33
AD6
A
968 1012Right-handed alpha
Helix 34
AD7
A
1014 1047Right-handed alpha
Helix 35
AD8
A
1048 1061Right-handed alpha
Helix 36
AD9
A
1061 1069Right-handed alpha
Helix 37
AE1
A
1070 1122Right-handed alpha
Helix 38
AE2
A
1127 1137Right-handed alpha
Helix 39
AE3
A
1139 1168Right-handed alpha
Helix 40
AE4
A
1249 1257Right-handed alpha
Helix 41
AE5
A
1275 1277Right-handed 310
Helix 42
AE6
A
1278 1283Right-handed alpha
Helix 43
AE7
A
1300 1305Right-handed alpha
Helix 44
AE8
A
1311 1320Right-handed alpha
Helix 45
AE9
A
1324 1329Right-handed alpha
Helix 46
AF1
A
1347 1362Right-handed alpha
Helix 47
AF2
A
1380 1391Right-handed alpha
Helix 48
AF3
A
1404 1409Right-handed 310
Helix 49
AF4
A
1426 1433Right-handed alpha
Helix 50
AF5
A
1434 1440Right-handed alpha
Helix 51
AF6
A
1442 1450Right-handed alpha
Helix 52
AF7
B
8 17Right-handed alpha
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There are 6 sheets in PDB entry 7SVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
905 906parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
392 398anti-parallel
Strand 3
A
479 483anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 572parallel
Strand 3
A
599 603parallel
Strand 4
A
453 458parallel
Strand 5
A
615 620parallel
Strand 6
A
623 628anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1227 1233first strand
Strand 2
A
1210 1218anti-parallel
Strand 3
A
1262 1269anti-parallel
Strand 4
A
1272 1273anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1286 1289first strand
Strand 2
A
1366 1370parallel
Strand 3
A
1396 1400parallel
Strand 4
A
1239 1244parallel
Strand 5
A
1412 1417parallel
Strand 6
A
1420 1424anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1298 1299first strand
Strand 2
A
1338 1339anti-parallel
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