Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SVJ entry

There are 2 chains in PDB entry 7SVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2ASN 327
B
 CYS 2ASN 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7SVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 110Right-handed alpha
Helix 2
AA2
A
112 121Right-handed alpha
Helix 3
AA3
A
176 184Right-handed alpha
Helix 4
AA4
A
185 188Right-handed 310
Helix 5
AA5
A
211 215Right-handed 310
Helix 6
AA6
A
222 236Right-handed alpha
Helix 7
AA7
A
242 256Right-handed alpha
Helix 8
AA8
A
303 305Right-handed 310
Helix 9
AA9
B
101 110Right-handed alpha
Helix 10
AB1
B
112 121Right-handed alpha
Helix 11
AB2
B
176 184Right-handed alpha
Helix 12
AB3
B
185 188Right-handed 310
Helix 13
AB4
B
211 215Right-handed 310
Helix 14
AB5
B
222 236Right-handed alpha
Helix 15
AB6
B
242 256Right-handed alpha
Helix 16
AB7
B
303 305Right-handed 310
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There are 8 sheets in PDB entry 7SVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
3 9anti-parallel
Strand 3
A
12 21anti-parallel
Strand 4
A
273 281anti-parallel
Strand 5
A
286 291anti-parallel
Strand 6
A
294 301anti-parallel
Strand 7
B
324 325parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 165first strand
Strand 2
A
151 157anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
75 80anti-parallel
Strand 5
A
62 70anti-parallel
Strand 6
A
52 59anti-parallel
Strand 7
A
28 32anti-parallel
Strand 8
A
313 316anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
123 125parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
270 271anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
B
294 301parallel
Strand 3
B
286 291anti-parallel
Strand 4
B
273 281anti-parallel
Strand 5
B
12 21anti-parallel
Strand 6
B
3 9anti-parallel
Strand 7
B
170 171anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
139 144anti-parallel
Strand 4
B
75 80anti-parallel
Strand 5
B
62 70anti-parallel
Strand 6
B
52 59anti-parallel
Strand 7
B
28 32anti-parallel
Strand 8
B
313 316anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
123 125parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 267first strand
Strand 2
B
270 271anti-parallel
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