Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SVM entry

There are 2 chains in PDB entry 7SVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 47	ILE 898
B	LYS 47	MET 420

There are 65 helices in PDB entry 7SVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	71	Right-handed alpha
Helix 2	AA2	A	72	76	Right-handed 310
Helix 3	AA3	A	149	160	Right-handed alpha
Helix 4	AA4	A	270	277	Right-handed alpha
Helix 5	AA5	A	320	324	Right-handed 310
Helix 6	AA6	A	367	372	Right-handed alpha
Helix 7	AA7	A	408	410	Right-handed 310
Helix 8	AA8	A	418	429	Right-handed alpha
Helix 9	AA9	A	492	496	Right-handed 310
Helix 10	AB1	A	500	505	Right-handed 310
Helix 11	AB2	A	686	695	Right-handed alpha
Helix 12	AB3	A	711	717	Right-handed alpha
Helix 13	AB4	A	725	741	Right-handed alpha
Helix 14	AB5	A	755	768	Right-handed alpha
Helix 15	AB6	A	783	787	Right-handed 310
Helix 16	AB7	A	788	797	Right-handed alpha
Helix 17	AB8	A	798	801	Right-handed 310
Helix 18	AB9	A	802	810	Right-handed alpha
Helix 19	AC1	A	811	818	Right-handed 310
Helix 20	AC2	A	838	852	Right-handed alpha
Helix 21	AC3	A	869	888	Right-handed alpha
Helix 22	AC4	A	890	896	Right-handed alpha
Helix 23	AC5	B	57	71	Right-handed alpha
Helix 24	AC6	B	72	76	Right-handed 310
Helix 25	AC7	B	149	160	Right-handed alpha
Helix 26	AC8	B	270	277	Right-handed alpha
Helix 27	AC9	B	320	324	Right-handed 310
Helix 28	AD1	B	367	372	Right-handed alpha
Helix 29	AD2	B	408	410	Right-handed 310
Helix 30	AD3	B	418	429	Right-handed alpha
Helix 31	AD4	B	492	496	Right-handed 310
Helix 32	AD5	B	500	505	Right-handed 310
Helix 33	AD6	B	686	695	Right-handed alpha
Helix 34	AD7	B	711	717	Right-handed alpha
Helix 35	AD8	B	725	741	Right-handed alpha
Helix 36	AD9	B	755	768	Right-handed alpha
Helix 37	AE1	B	783	787	Right-handed 310
Helix 38	AE2	B	788	797	Right-handed alpha
Helix 39	AE3	B	802	810	Right-handed alpha
Helix 40	AE4	B	811	818	Right-handed 310
Helix 41	AE5	B	838	851	Right-handed alpha
Helix 42	AE6	B	869	888	Right-handed alpha
Helix 43	AE7	B	890	896	Right-handed alpha
Helix 44	AE8	C	57	71	Right-handed alpha
Helix 45	AE9	C	72	74	Right-handed 310
Helix 46	AF1	C	149	160	Right-handed alpha
Helix 47	AF2	C	270	277	Right-handed alpha
Helix 48	AF3	C	320	324	Right-handed 310
Helix 49	AF4	C	367	372	Right-handed alpha
Helix 50	AF5	C	408	410	Right-handed 310
Helix 51	AF6	C	418	428	Right-handed alpha
Helix 52	AF7	C	492	496	Right-handed 310
Helix 53	AF8	C	500	505	Right-handed 310
Helix 54	AF9	C	686	695	Right-handed alpha
Helix 55	AG1	C	711	717	Right-handed alpha
Helix 56	AG2	C	725	741	Right-handed alpha
Helix 57	AG3	C	755	768	Right-handed alpha
Helix 58	AG4	C	783	787	Right-handed 310
Helix 59	AG5	C	788	797	Right-handed alpha
Helix 60	AG6	C	798	801	Right-handed 310
Helix 61	AG7	C	802	810	Right-handed alpha
Helix 62	AG8	C	811	818	Right-handed 310
Helix 63	AG9	C	838	851	Right-handed alpha
Helix 64	AH1	C	869	888	Right-handed alpha
Helix 65	AH2	C	890	896	Right-handed alpha

There are 33 sheets in PDB entry 7SVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	660	667	parallel
Strand 3	A	698	702	parallel
Strand 4	A	645	651	anti-parallel
Strand 5	A	634	639	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	660	667	parallel
Strand 3	A	744	754	parallel
Strand 4	A	772	778	parallel
Strand 5	A	825	830	parallel
Strand 6	A	856	860	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	87	first strand
Strand 2	A	95	103	anti-parallel
Strand 3	A	112	119	anti-parallel
Strand 4	A	133	134	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	177	182	anti-parallel
Strand 3	A	185	190	anti-parallel
Strand 4	A	205	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	220	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	235	240	anti-parallel
Strand 4	A	246	248	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	412	414	first strand
Strand 3	A	264	268	first strand
Strand 4	A	281	285	anti-parallel
Strand 5	A	297	307	anti-parallel
Strand 6	A	340	350	anti-parallel
Strand 7	A	356	364	anti-parallel
Strand 8	A	412	414	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	317	first strand
Strand 2	A	326	330	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	383	first strand
Strand 2	A	390	396	anti-parallel
Strand 3	A	401	407	anti-parallel
Strand 4	A	436	442	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	455	first strand
Strand 2	A	463	470	anti-parallel
Strand 3	A	478	485	anti-parallel
Strand 4	A	508	513	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	532	first strand
Strand 2	A	537	542	anti-parallel
Strand 3	A	551	556	anti-parallel
Strand 4	A	564	565	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	577	first strand
Strand 2	A	583	590	anti-parallel
Strand 3	A	593	603	anti-parallel
Strand 4	A	613	621	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	660	667	parallel
Strand 3	B	698	702	parallel
Strand 4	B	645	651	anti-parallel
Strand 5	B	634	639	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	660	667	parallel
Strand 3	B	744	754	parallel
Strand 4	B	772	778	parallel
Strand 5	B	825	830	parallel
Strand 6	B	856	860	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	87	first strand
Strand 2	B	95	103	anti-parallel
Strand 3	B	112	119	anti-parallel
Strand 4	B	133	134	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	613	621	parallel
Strand 3	B	593	603	anti-parallel
Strand 4	B	583	590	anti-parallel
Strand 5	B	572	577	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	185	190	anti-parallel
Strand 4	B	205	206	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	220	first strand
Strand 2	B	227	232	anti-parallel
Strand 3	B	235	240	anti-parallel
Strand 4	B	246	248	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	412	414	first strand
Strand 3	B	264	268	first strand
Strand 4	B	281	285	anti-parallel
Strand 5	B	297	307	anti-parallel
Strand 6	B	340	350	anti-parallel
Strand 7	B	356	364	anti-parallel
Strand 8	B	412	414	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	317	first strand
Strand 2	B	326	330	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	383	first strand
Strand 2	B	390	396	anti-parallel
Strand 3	B	401	407	anti-parallel
Strand 4	B	436	442	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	455	first strand
Strand 2	B	463	470	anti-parallel
Strand 3	B	478	485	anti-parallel
Strand 4	B	508	513	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	532	first strand
Strand 2	B	537	542	anti-parallel
Strand 3	B	551	556	anti-parallel
Strand 4	B	564	565	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	660	667	parallel
Strand 3	C	698	703	parallel
Strand 4	C	645	651	anti-parallel
Strand 5	C	634	639	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	660	667	parallel
Strand 3	C	744	754	parallel
Strand 4	C	772	778	parallel
Strand 5	C	825	830	parallel
Strand 6	C	856	860	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	87	first strand
Strand 2	C	95	104	anti-parallel
Strand 3	C	111	119	anti-parallel
Strand 4	C	133	134	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	177	182	anti-parallel
Strand 3	C	185	190	anti-parallel
Strand 4	C	205	206	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	220	first strand
Strand 2	C	227	232	anti-parallel
Strand 3	C	235	240	anti-parallel
Strand 4	C	246	248	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	412	414	first strand
Strand 3	C	264	268	first strand
Strand 4	C	281	285	anti-parallel
Strand 5	C	297	307	anti-parallel
Strand 6	C	340	350	anti-parallel
Strand 7	C	356	364	anti-parallel
Strand 8	C	412	414	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	317	first strand
Strand 2	C	326	330	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	383	first strand
Strand 2	C	390	396	anti-parallel
Strand 3	C	401	407	anti-parallel
Strand 4	C	436	442	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	463	470	anti-parallel
Strand 3	C	478	485	anti-parallel
Strand 4	C	508	513	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	529	532	first strand
Strand 2	C	537	542	anti-parallel
Strand 3	C	551	556	anti-parallel
Strand 4	C	564	565	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	572	577	first strand
Strand 2	C	583	590	anti-parallel
Strand 3	C	593	603	anti-parallel
Strand 4	C	613	621	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVM