Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SVP entry

There are 3 chains in PDB entry 7SVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 320	THR 933
A	HIS 321	THR 933
B	LEU 320	PHE 526

There are 74 helices in PDB entry 7SVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	321	325	Right-handed 310
Helix 2	AA2	C	340	354	Right-handed alpha
Helix 3	AA3	C	382	392	Right-handed alpha
Helix 4	AA4	C	412	424	Right-handed alpha
Helix 5	AA5	C	507	511	Right-handed 310
Helix 6	AA6	C	549	568	Right-handed alpha
Helix 7	AA7	C	569	570	Right-handed 310
Helix 8	AA8	C	571	575	Right-handed 310
Helix 9	AA9	C	621	633	Right-handed alpha
Helix 10	AB1	C	656	672	Right-handed alpha
Helix 11	AB2	C	696	711	Right-handed alpha
Helix 12	AB3	C	716	726	Right-handed alpha
Helix 13	AB4	C	727	731	Right-handed 310
Helix 14	AB5	C	775	780	Right-handed alpha
Helix 15	AB6	C	810	824	Right-handed alpha
Helix 16	AB7	C	839	862	Right-handed alpha
Helix 17	AB8	C	871	879	Right-handed alpha
Helix 18	AB9	C	888	897	Right-handed alpha
Helix 19	AC1	C	928	933	Right-handed 310
Helix 20	AC2	A	340	354	Right-handed alpha
Helix 21	AC3	A	382	393	Right-handed alpha
Helix 22	AC4	A	412	424	Right-handed alpha
Helix 23	AC5	A	507	511	Right-handed 310
Helix 24	AC6	A	549	570	Right-handed alpha
Helix 25	AC7	A	621	633	Right-handed alpha
Helix 26	AC8	A	656	672	Right-handed alpha
Helix 27	AC9	A	690	694	Right-handed 310
Helix 28	AD1	A	697	711	Right-handed alpha
Helix 29	AD2	A	716	726	Right-handed alpha
Helix 30	AD3	A	727	731	Right-handed 310
Helix 31	AD4	A	775	780	Right-handed alpha
Helix 32	AD5	A	810	824	Right-handed alpha
Helix 33	AD6	A	839	862	Right-handed alpha
Helix 34	AD7	A	871	880	Right-handed alpha
Helix 35	AD8	A	883	888	Right-handed alpha
Helix 36	AD9	A	888	897	Right-handed alpha
Helix 37	AE1	A	928	932	Right-handed 310
Helix 38	AE2	B	321	325	Right-handed 310
Helix 39	AE3	B	340	354	Right-handed alpha
Helix 40	AE4	B	378	381	Right-handed 310
Helix 41	AE5	B	382	393	Right-handed alpha
Helix 42	AE6	B	412	424	Right-handed alpha
Helix 43	AE7	B	507	511	Right-handed 310
Helix 44	AE8	B	549	569	Right-handed alpha
Helix 45	AE9	B	571	575	Right-handed 310
Helix 46	AF1	B	621	633	Right-handed alpha
Helix 47	AF2	B	656	672	Right-handed alpha
Helix 48	AF3	B	697	711	Right-handed alpha
Helix 49	AF4	B	716	726	Right-handed alpha
Helix 50	AF5	B	727	731	Right-handed 310
Helix 51	AF6	B	775	780	Right-handed alpha
Helix 52	AF7	B	810	824	Right-handed alpha
Helix 53	AF8	B	839	862	Right-handed alpha
Helix 54	AF9	B	871	879	Right-handed alpha
Helix 55	AG1	B	883	888	Right-handed alpha
Helix 56	AG2	B	888	897	Right-handed alpha
Helix 57	AG3	D	321	325	Right-handed 310
Helix 58	AG4	D	340	354	Right-handed alpha
Helix 59	AG5	D	382	393	Right-handed alpha
Helix 60	AG6	D	412	424	Right-handed alpha
Helix 61	AG7	D	507	511	Right-handed 310
Helix 62	AG8	D	549	568	Right-handed alpha
Helix 63	AG9	D	621	633	Right-handed alpha
Helix 64	AH1	D	656	671	Right-handed alpha
Helix 65	AH2	D	697	711	Right-handed alpha
Helix 66	AH3	D	716	722	Right-handed alpha
Helix 67	AH4	D	727	731	Right-handed 310
Helix 68	AH5	D	775	780	Right-handed alpha
Helix 69	AH6	D	810	824	Right-handed alpha
Helix 70	AH7	D	839	862	Right-handed alpha
Helix 71	AH8	D	871	877	Right-handed alpha
Helix 72	AH9	D	883	888	Right-handed alpha
Helix 73	AI1	D	888	897	Right-handed alpha
Helix 74	AI2	D	928	932	Right-handed 310

There are 16 sheets in PDB entry 7SVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	432	first strand
Strand 2	C	396	402	parallel
Strand 3	C	358	363	parallel
Strand 4	C	445	448	anti-parallel
Strand 5	C	452	456	anti-parallel
Strand 6	C	543	548	anti-parallel
Strand 7	C	330	339	anti-parallel
Strand 8	C	600	610	anti-parallel
Strand 9	C	786	793	anti-parallel
Strand 10	C	766	770	anti-parallel
Strand 11	C	758	762	anti-parallel
Strand 12	C	636	641	anti-parallel
Strand 13	C	676	680	parallel
Strand 14	C	733	744	parallel
Strand 15	C	747	752	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	620	first strand
Strand 2	C	600	610	anti-parallel
Strand 3	C	786	793	anti-parallel
Strand 4	C	766	770	anti-parallel
Strand 5	C	758	762	anti-parallel
Strand 6	C	636	641	anti-parallel
Strand 7	C	676	680	parallel
Strand 8	C	733	744	parallel
Strand 9	C	903	905	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	540	541	first strand
Strand 2	C	754	755	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	796	801	first strand
Strand 2	C	804	809	anti-parallel

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There are 15 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	432	first strand
Strand 2	A	396	402	parallel
Strand 3	A	358	363	parallel
Strand 4	A	444	448	anti-parallel
Strand 5	A	452	456	anti-parallel
Strand 6	A	543	548	anti-parallel
Strand 7	A	330	339	anti-parallel
Strand 8	A	600	610	anti-parallel
Strand 9	A	786	793	anti-parallel
Strand 10	A	766	770	anti-parallel
Strand 11	A	758	762	anti-parallel
Strand 12	A	636	641	anti-parallel
Strand 13	A	676	680	parallel
Strand 14	A	733	744	parallel
Strand 15	A	747	752	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	620	first strand
Strand 2	A	600	610	anti-parallel
Strand 3	A	786	793	anti-parallel
Strand 4	A	766	770	anti-parallel
Strand 5	A	758	762	anti-parallel
Strand 6	A	636	641	anti-parallel
Strand 7	A	676	680	parallel
Strand 8	A	733	744	parallel
Strand 9	A	903	905	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	541	first strand
Strand 2	A	754	755	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	801	first strand
Strand 2	A	804	809	anti-parallel

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There are 15 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	432	first strand
Strand 2	B	396	402	parallel
Strand 3	B	358	363	parallel
Strand 4	B	445	448	anti-parallel
Strand 5	B	452	456	anti-parallel
Strand 6	B	543	548	anti-parallel
Strand 7	B	330	339	anti-parallel
Strand 8	B	600	610	anti-parallel
Strand 9	B	786	793	anti-parallel
Strand 10	B	766	770	anti-parallel
Strand 11	B	758	762	anti-parallel
Strand 12	B	636	641	anti-parallel
Strand 13	B	676	680	parallel
Strand 14	B	733	744	parallel
Strand 15	B	747	752	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	620	first strand
Strand 2	B	600	610	anti-parallel
Strand 3	B	786	793	anti-parallel
Strand 4	B	766	770	anti-parallel
Strand 5	B	758	762	anti-parallel
Strand 6	B	636	641	anti-parallel
Strand 7	B	676	680	parallel
Strand 8	B	733	744	parallel
Strand 9	B	903	905	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	541	first strand
Strand 2	B	754	755	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	801	first strand
Strand 2	B	804	809	anti-parallel

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There are 15 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	432	first strand
Strand 2	D	396	402	parallel
Strand 3	D	358	363	parallel
Strand 4	D	445	448	anti-parallel
Strand 5	D	452	456	anti-parallel
Strand 6	D	543	548	anti-parallel
Strand 7	D	330	339	anti-parallel
Strand 8	D	601	610	anti-parallel
Strand 9	D	786	793	anti-parallel
Strand 10	D	766	770	anti-parallel
Strand 11	D	758	762	anti-parallel
Strand 12	D	636	641	anti-parallel
Strand 13	D	676	680	parallel
Strand 14	D	733	744	parallel
Strand 15	D	747	752	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	619	620	first strand
Strand 2	D	601	610	anti-parallel
Strand 3	D	786	793	anti-parallel
Strand 4	D	766	770	anti-parallel
Strand 5	D	758	762	anti-parallel
Strand 6	D	636	641	anti-parallel
Strand 7	D	676	680	parallel
Strand 8	D	733	744	parallel
Strand 9	D	903	905	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	540	541	first strand
Strand 2	D	754	755	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	796	801	first strand
Strand 2	D	804	809	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVP