Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SVR entry

There are 2 chains in PDB entry 7SVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LEU 1436
B
 UNK 1UNK 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 7SVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
20 28Right-handed alpha
Helix 3
AA3
A
33 37Right-handed 310
Helix 4
AA4
A
41 45Right-handed 310
Helix 5
AA5
A
46 64Right-handed alpha
Helix 6
AA6
A
69 74Right-handed alpha
Helix 7
AA7
A
77 103Right-handed alpha
Helix 8
AA8
A
104 108Right-handed 310
Helix 9
AA9
A
120 138Right-handed alpha
Helix 10
AB1
A
138 165Right-handed alpha
Helix 11
AB2
A
168 173Right-handed alpha
Helix 12
AB3
A
176 187Right-handed alpha
Helix 13
AB4
A
189 194Right-handed alpha
Helix 14
AB5
A
198 201Right-handed 310
Helix 15
AB6
A
202 220Right-handed alpha
Helix 16
AB7
A
223 267Right-handed alpha
Helix 17
AB8
A
268 276Right-handed alpha
Helix 18
AB9
A
277 329Right-handed alpha
Helix 19
AC1
A
333 349Right-handed alpha
Helix 20
AC2
A
352 376Right-handed alpha
Helix 21
AC3
A
463 472Right-handed alpha
Helix 22
AC4
A
501 506Right-handed alpha
Helix 23
AC5
A
513 524Right-handed alpha
Helix 24
AC6
A
526 532Right-handed alpha
Helix 25
AC7
A
549 563Right-handed alpha
Helix 26
AC8
A
573 577Right-handed 310
Helix 27
AC9
A
579 590Right-handed alpha
Helix 28
AD1
A
609 613Right-handed 310
Helix 29
AD2
A
630 634Right-handed alpha
Helix 30
AD3
A
637 645Right-handed alpha
Helix 31
AD4
A
845 854Right-handed alpha
Helix 32
AD5
A
856 886Right-handed alpha
Helix 33
AD6
A
911 916Right-handed alpha
Helix 34
AD7
A
916 921Right-handed alpha
Helix 35
AD8
A
922 928Right-handed alpha
Helix 36
AD9
A
934 957Right-handed alpha
Helix 37
AE1
A
960 965Right-handed alpha
Helix 38
AE2
A
969 974Right-handed alpha
Helix 39
AE3
A
978 1012Right-handed alpha
Helix 40
AE4
A
1014 1061Right-handed alpha
Helix 41
AE5
A
1061 1069Right-handed alpha
Helix 42
AE6
A
1070 1120Right-handed alpha
Helix 43
AE7
A
1126 1139Right-handed alpha
Helix 44
AE8
A
1139 1168Right-handed alpha
Helix 45
AE9
A
1250 1257Right-handed alpha
Helix 46
AF1
A
1278 1283Right-handed alpha
Helix 47
AF2
A
1299 1305Right-handed alpha
Helix 48
AF3
A
1311 1321Right-handed alpha
Helix 49
AF4
A
1324 1330Right-handed alpha
Helix 50
AF5
A
1339 1344Right-handed alpha
Helix 51
AF6
A
1347 1362Right-handed alpha
Helix 52
AF7
A
1371 1376Right-handed alpha
Helix 53
AF8
A
1377 1391Right-handed alpha
Helix 54
AF9
A
1403 1408Right-handed alpha
Helix 55
AG1
A
1429 1434Right-handed alpha
Helix 56
AG2
B
9 18Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7SVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
392 397anti-parallel
Strand 3
A
481 483anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 603first strand
Strand 2
A
453 458parallel
Strand 3
A
615 620parallel
Strand 4
A
623 629anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 571parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1230 1234first strand
Strand 2
A
1210 1218anti-parallel
Strand 3
A
1262 1269anti-parallel
Strand 4
A
1272 1273anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1240 1241first strand
Strand 2
A
1412 1413parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1286 1289first strand
Strand 2
A
1366 1369parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il