Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SVW entry

There are 10 chains in PDB entry 7SVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	C -30	G 19
2	T 1	G 30
3	C 6	A 20
4	C -30	G 19
5	T 1	G 30
6	C 6	A 20
A	ASP 196	THR 519
B	LEU 29	ALA 474
C	ASP 196	THR 519
D	LEU 29	ALA 474

There are 60 helices in PDB entry 7SVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	251	261	Right-handed alpha
Helix 2	AA2	A	266	270	Right-handed 310
Helix 3	AA3	A	296	305	Right-handed alpha
Helix 4	AA4	A	323	331	Right-handed alpha
Helix 5	AA5	A	332	335	Right-handed 310
Helix 6	AA6	A	357	372	Right-handed alpha
Helix 7	AA7	A	373	376	Right-handed 310
Helix 8	AA8	A	385	393	Right-handed alpha
Helix 9	AA9	A	402	407	Right-handed 310
Helix 10	AB1	A	436	440	Right-handed 310
Helix 11	AB2	A	483	502	Right-handed alpha
Helix 12	AB3	A	505	519	Right-handed alpha
Helix 13	AB4	B	39	54	Right-handed alpha
Helix 14	AB5	B	57	73	Right-handed alpha
Helix 15	AB6	B	78	90	Right-handed alpha
Helix 16	AB7	B	91	95	Right-handed 310
Helix 17	AB8	B	108	123	Right-handed alpha
Helix 18	AB9	B	130	145	Right-handed alpha
Helix 19	AC1	B	152	160	Right-handed alpha
Helix 20	AC2	B	160	171	Right-handed alpha
Helix 21	AC3	B	248	261	Right-handed alpha
Helix 22	AC4	B	266	270	Right-handed 310
Helix 23	AC5	B	289	293	Right-handed 310
Helix 24	AC6	B	294	305	Right-handed alpha
Helix 25	AC7	B	322	331	Right-handed alpha
Helix 26	AC8	B	332	335	Right-handed 310
Helix 27	AC9	B	357	372	Right-handed alpha
Helix 28	AD1	B	385	393	Right-handed alpha
Helix 29	AD2	B	402	410	Right-handed 310
Helix 30	AD3	B	435	440	Right-handed 310
Helix 31	AD4	C	251	261	Right-handed alpha
Helix 32	AD5	C	266	270	Right-handed 310
Helix 33	AD6	C	296	305	Right-handed alpha
Helix 34	AD7	C	323	331	Right-handed alpha
Helix 35	AD8	C	332	335	Right-handed 310
Helix 36	AD9	C	357	372	Right-handed alpha
Helix 37	AE1	C	373	376	Right-handed 310
Helix 38	AE2	C	385	393	Right-handed alpha
Helix 39	AE3	C	402	407	Right-handed 310
Helix 40	AE4	C	436	440	Right-handed 310
Helix 41	AE5	C	483	499	Right-handed alpha
Helix 42	AE6	C	505	519	Right-handed alpha
Helix 43	AE7	D	39	54	Right-handed alpha
Helix 44	AE8	D	57	73	Right-handed alpha
Helix 45	AE9	D	77	90	Right-handed alpha
Helix 46	AF1	D	91	95	Right-handed 310
Helix 47	AF2	D	108	123	Right-handed alpha
Helix 48	AF3	D	130	145	Right-handed alpha
Helix 49	AF4	D	152	160	Right-handed alpha
Helix 50	AF5	D	160	171	Right-handed alpha
Helix 51	AF6	D	248	261	Right-handed alpha
Helix 52	AF7	D	266	270	Right-handed 310
Helix 53	AF8	D	289	293	Right-handed 310
Helix 54	AF9	D	294	305	Right-handed alpha
Helix 55	AG1	D	322	331	Right-handed alpha
Helix 56	AG2	D	332	335	Right-handed 310
Helix 57	AG3	D	357	372	Right-handed alpha
Helix 58	AG4	D	385	393	Right-handed alpha
Helix 59	AG5	D	402	410	Right-handed 310
Helix 60	AG6	D	435	440	Right-handed 310

There are 16 sheets in PDB entry 7SVW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	243	first strand
Strand 2	A	225	231	anti-parallel
Strand 3	A	201	208	anti-parallel
Strand 4	A	283	287	parallel
Strand 5	A	307	311	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	417	first strand
Strand 2	A	443	449	anti-parallel
Strand 3	A	452	462	anti-parallel
Strand 4	A	465	475	anti-parallel
Strand 5	A	429	433	anti-parallel
Strand 6	A	423	426	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	417	first strand
Strand 2	A	443	449	anti-parallel
Strand 3	A	452	462	anti-parallel
Strand 4	A	465	475	anti-parallel
Strand 5	B	33	35	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	192	194	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	243	first strand
Strand 2	B	225	231	anti-parallel
Strand 3	B	201	208	anti-parallel
Strand 4	B	283	286	parallel
Strand 5	B	307	310	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	220	221	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	417	first strand
Strand 2	B	443	449	anti-parallel
Strand 3	B	452	462	anti-parallel
Strand 4	B	465	473	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	425	first strand
Strand 2	B	430	431	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	243	first strand
Strand 2	C	225	231	anti-parallel
Strand 3	C	201	208	anti-parallel
Strand 4	C	283	287	parallel
Strand 5	C	307	311	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	417	first strand
Strand 2	C	443	449	anti-parallel
Strand 3	C	452	462	anti-parallel
Strand 4	C	465	475	anti-parallel
Strand 5	C	429	433	anti-parallel
Strand 6	C	423	426	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	417	first strand
Strand 2	C	443	449	anti-parallel
Strand 3	C	452	462	anti-parallel
Strand 4	C	465	475	anti-parallel
Strand 5	D	33	35	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	186	first strand
Strand 2	D	192	194	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	243	first strand
Strand 2	D	225	231	anti-parallel
Strand 3	D	201	208	anti-parallel
Strand 4	D	283	286	parallel
Strand 5	D	307	310	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	220	221	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	417	first strand
Strand 2	D	443	449	anti-parallel
Strand 3	D	452	462	anti-parallel
Strand 4	D	465	473	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	425	first strand
Strand 2	D	430	431	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SVW