Analysis of interatomic Contacts of Structural Units in PDB entry:
7SWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SWJ entry

There are 4 chains in PDB entry 7SWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 301
B	MET 1	THR 301
C	MET 1	THR 301
D	MET 1	THR 301

There are 56 helices in PDB entry 7SWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	10	Right-handed 310
Helix 2	AA2	A	13	17	Right-handed 310
Helix 3	AA3	A	18	22	Right-handed 310
Helix 4	AA4	A	39	43	Right-handed 310
Helix 5	AA5	A	44	45	Right-handed 310
Helix 6	AA6	A	46	58	Right-handed alpha
Helix 7	AA7	A	58	83	Right-handed alpha
Helix 8	AA8	A	96	110	Right-handed alpha
Helix 9	AA9	A	120	151	Right-handed alpha
Helix 10	AB1	A	154	158	Right-handed 310
Helix 11	AB2	A	212	217	Right-handed alpha
Helix 12	AB3	A	236	241	Right-handed 310
Helix 13	AB4	A	242	249	Right-handed alpha
Helix 14	AB5	A	281	287	Right-handed 310
Helix 15	AB6	B	6	10	Right-handed 310
Helix 16	AB7	B	13	17	Right-handed 310
Helix 17	AB8	B	18	22	Right-handed 310
Helix 18	AB9	B	39	43	Right-handed 310
Helix 19	AC1	B	44	45	Right-handed 310
Helix 20	AC2	B	46	58	Right-handed alpha
Helix 21	AC3	B	58	83	Right-handed alpha
Helix 22	AC4	B	96	110	Right-handed alpha
Helix 23	AC5	B	120	151	Right-handed alpha
Helix 24	AC6	B	154	158	Right-handed 310
Helix 25	AC7	B	212	217	Right-handed alpha
Helix 26	AC8	B	236	241	Right-handed 310
Helix 27	AC9	B	242	249	Right-handed alpha
Helix 28	AD1	B	281	287	Right-handed 310
Helix 29	AD2	C	6	10	Right-handed 310
Helix 30	AD3	C	13	17	Right-handed 310
Helix 31	AD4	C	18	22	Right-handed 310
Helix 32	AD5	C	39	43	Right-handed 310
Helix 33	AD6	C	44	45	Right-handed 310
Helix 34	AD7	C	46	58	Right-handed alpha
Helix 35	AD8	C	58	83	Right-handed alpha
Helix 36	AD9	C	96	110	Right-handed alpha
Helix 37	AE1	C	120	151	Right-handed alpha
Helix 38	AE2	C	154	158	Right-handed 310
Helix 39	AE3	C	212	217	Right-handed alpha
Helix 40	AE4	C	236	241	Right-handed 310
Helix 41	AE5	C	242	249	Right-handed alpha
Helix 42	AE6	C	281	287	Right-handed 310
Helix 43	AE7	D	6	10	Right-handed 310
Helix 44	AE8	D	13	17	Right-handed 310
Helix 45	AE9	D	18	22	Right-handed 310
Helix 46	AF1	D	39	43	Right-handed 310
Helix 47	AF2	D	44	45	Right-handed 310
Helix 48	AF3	D	46	58	Right-handed alpha
Helix 49	AF4	D	58	83	Right-handed alpha
Helix 50	AF5	D	96	110	Right-handed alpha
Helix 51	AF6	D	120	151	Right-handed alpha
Helix 52	AF7	D	154	158	Right-handed 310
Helix 53	AF8	D	212	217	Right-handed alpha
Helix 54	AF9	D	236	241	Right-handed 310
Helix 55	AG1	D	242	249	Right-handed alpha
Helix 56	AG2	D	281	287	Right-handed 310

There are 8 sheets in PDB entry 7SWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	231	first strand
Strand 2	A	170	176	anti-parallel
Strand 3	A	162	167	anti-parallel
Strand 4	A	279	280	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	187	194	anti-parallel
Strand 3	A	252	259	anti-parallel
Strand 4	A	268	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	231	first strand
Strand 2	B	170	176	anti-parallel
Strand 3	B	162	167	anti-parallel
Strand 4	B	279	280	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	187	194	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	268	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	231	first strand
Strand 2	C	170	176	anti-parallel
Strand 3	C	162	167	anti-parallel
Strand 4	C	279	280	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	210	first strand
Strand 2	C	187	194	anti-parallel
Strand 3	C	252	259	anti-parallel
Strand 4	C	268	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	231	first strand
Strand 2	D	170	176	anti-parallel
Strand 3	D	162	167	anti-parallel
Strand 4	D	279	280	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	210	first strand
Strand 2	D	187	194	anti-parallel
Strand 3	D	252	259	anti-parallel
Strand 4	D	268	275	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SWJ