Analysis of interatomic Contacts of Structural Units in PDB entry:
7SWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SWK entry

There are 2 chains in PDB entry 7SWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4PHE 490
B
 ARG 3PHE 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7SWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 63Right-handed alpha
Helix 2
AA2
A
64 82Right-handed alpha
Helix 3
AA3
A
82 95Right-handed alpha
Helix 4
AA4
A
97 102Right-handed alpha
Helix 5
AA5
A
104 120Right-handed alpha
Helix 6
AA6
A
121 123Right-handed 310
Helix 7
AA7
A
154 169Right-handed alpha
Helix 8
AA8
A
182 195Right-handed alpha
Helix 9
AA9
A
211 219Right-handed alpha
Helix 10
AB1
A
230 246Right-handed alpha
Helix 11
AB2
A
266 277Right-handed alpha
Helix 12
AB3
A
279 284Right-handed 310
Helix 13
AB4
A
296 311Right-handed alpha
Helix 14
AB5
A
330 347Right-handed alpha
Helix 15
AB6
A
381 386Right-handed alpha
Helix 16
AB7
A
400 410Right-handed alpha
Helix 17
AB8
A
423 433Right-handed alpha
Helix 18
AB9
A
456 458Right-handed 310
Helix 19
AC1
A
465 473Right-handed alpha
Helix 20
AC2
B
42 63Right-handed alpha
Helix 21
AC3
B
64 82Right-handed alpha
Helix 22
AC4
B
82 95Right-handed alpha
Helix 23
AC5
B
97 102Right-handed alpha
Helix 24
AC6
B
104 120Right-handed alpha
Helix 25
AC7
B
121 123Right-handed 310
Helix 26
AC8
B
154 169Right-handed alpha
Helix 27
AC9
B
182 195Right-handed alpha
Helix 28
AD1
B
211 219Right-handed alpha
Helix 29
AD2
B
230 246Right-handed alpha
Helix 30
AD3
B
266 280Right-handed alpha
Helix 31
AD4
B
281 284Right-handed 310
Helix 32
AD5
B
296 311Right-handed alpha
Helix 33
AD6
B
330 347Right-handed alpha
Helix 34
AD7
B
381 386Right-handed alpha
Helix 35
AD8
B
400 410Right-handed alpha
Helix 36
AD9
B
423 434Right-handed alpha
Helix 37
AE1
B
456 458Right-handed 310
Helix 38
AE2
B
465 473Right-handed alpha
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There are 8 sheets in PDB entry 7SWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
15 16anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
34 39anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
134 142anti-parallel
Strand 3
A
474 482anti-parallel
Strand 4
B
438 441parallel
Strand 5
B
416 420parallel
Strand 6
B
258 261parallel
Strand 7
B
291 295parallel
Strand 8
B
392 398parallel
Strand 9
B
372 375parallel
Strand 10
B
350 353anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
172 176parallel
Strand 3
A
145 149parallel
Strand 4
A
224 228parallel
Strand 5
A
248 252parallel
Strand 6
A
460 461anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
372 375anti-parallel
Strand 3
A
392 398parallel
Strand 4
A
291 295parallel
Strand 5
A
258 261parallel
Strand 6
A
416 420parallel
Strand 7
A
438 441parallel
Strand 8
B
474 482parallel
Strand 9
B
134 142anti-parallel
Strand 10
B
127 131anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
15 16anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
34 39anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
172 176parallel
Strand 3
B
145 149parallel
Strand 4
B
224 228parallel
Strand 5
B
248 252parallel
Strand 6
B
460 461anti-parallel
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