Analysis of interatomic Contacts of Structural Units in PDB entry:
7SYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SYF entry

There is 1 chain in PDB entry 7SYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 42LEU 1659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 7SYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 82Right-handed alpha
Helix 2
AA2
A
92 121Right-handed alpha
Helix 3
AA3
A
131 143Right-handed alpha
Helix 4
AA4
A
144 165Right-handed alpha
Helix 5
AA5
A
165 180Right-handed alpha
Helix 6
AA6
A
187 192Right-handed alpha
Helix 7
AA7
A
193 213Right-handed alpha
Helix 8
AA8
A
218 237Right-handed alpha
Helix 9
AA9
A
237 256Right-handed alpha
Helix 10
AB1
A
264 269Right-handed alpha
Helix 11
AB2
A
376 421Right-handed alpha
Helix 12
AB3
A
444 454Right-handed alpha
Helix 13
AB4
A
459 473Right-handed alpha
Helix 14
AB5
A
504 523Right-handed alpha
Helix 15
AB6
A
545 555Right-handed alpha
Helix 16
AB7
A
560 574Right-handed alpha
Helix 17
AB8
A
596 603Right-handed alpha
Helix 18
AB9
A
606 610Right-handed 310
Helix 19
AC1
A
655 661Right-handed alpha
Helix 20
AC2
A
675 679Right-handed 310
Helix 21
AC3
A
680 694Right-handed alpha
Helix 22
AC4
A
738 744Right-handed alpha
Helix 23
AC5
A
763 769Right-handed alpha
Helix 24
AC6
A
771 778Right-handed alpha
Helix 25
AC7
A
779 782Right-handed 310
Helix 26
AC8
A
791 806Right-handed alpha
Helix 27
AC9
A
878 908Right-handed alpha
Helix 28
AD1
A
913 946Right-handed alpha
Helix 29
AD2
A
963 968Right-handed 310
Helix 30
AD3
A
1064 1068Right-handed alpha
Helix 31
AD4
A
1069 1108Right-handed alpha
Helix 32
AD5
A
1213 1237Right-handed alpha
Helix 33
AD6
A
1238 1248Right-handed alpha
Helix 34
AD7
A
1256 1263Right-handed alpha
Helix 35
AD8
A
1263 1281Right-handed alpha
Helix 36
AD9
A
1284 1315Right-handed alpha
Helix 37
AE1
A
1316 1346Right-handed alpha
Helix 38
AE2
A
1353 1357Right-handed 310
Helix 39
AE3
A
1359 1375Right-handed alpha
Helix 40
AE4
A
1389 1407Right-handed alpha
Helix 41
AE5
A
1444 1450Right-handed alpha
Helix 42
AE6
A
1452 1457Right-handed alpha
Helix 43
AE7
A
1480 1517Right-handed alpha
Helix 44
AE8
A
1521 1551Right-handed alpha
Helix 45
AE9
A
1563 1576Right-handed alpha
Helix 46
AF1
A
1588 1606Right-handed alpha
Helix 47
AF2
A
1609 1611Right-handed 310
Helix 48
AF3
A
1612 1624Right-handed alpha
Helix 49
AF4
A
1626 1631Right-handed alpha
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There are 7 sheets in PDB entry 7SYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
325 332parallel
Strand 3
A
297 302anti-parallel
Strand 4
A
287 294anti-parallel
Strand 5
A
272 281anti-parallel
Strand 6
A
368 373anti-parallel
Strand 7
A
358 363anti-parallel
Strand 8
A
338 340anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
438 443anti-parallel
Strand 3
A
491 494anti-parallel
Strand 4
A
476 478anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 533first strand
Strand 2
A
538 544anti-parallel
Strand 3
A
592 595anti-parallel
Strand 4
A
577 579anti-parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 671first strand
Strand 2
A
698 703anti-parallel
Strand 3
A
615 628anti-parallel
Strand 4
A
852 860anti-parallel
Strand 5
A
866 874anti-parallel
Strand 6
A
973 980anti-parallel
Strand 7
A
1017 1026anti-parallel
Strand 8
A
1578 1583parallel
Strand 9
A
1376 1381parallel
Strand 10
A
1461 1468parallel
Strand 11
A
1410 1415anti-parallel
Strand 12
A
1438 1443parallel
Strand 13
A
1426 1431anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 642first strand
Strand 2
A
645 651anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 713first strand
Strand 2
A
841 847anti-parallel
Strand 3
A
750 754anti-parallel
Strand 4
A
757 758anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 724first strand
Strand 2
A
730 735anti-parallel
Strand 3
A
787 789anti-parallel
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