Analysis of interatomic Contacts of Structural Units in PDB entry:
7SZD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SZD entry

There are 4 chains in PDB entry 7SZD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 18	ARG 249
B	HIS 0	LEU 175
C	GLU 18	ARG 249
D	HIS 0	LEU 175

There are 41 helices in PDB entry 7SZD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	35	Right-handed alpha
Helix 2	AA2	A	69	93	Right-handed alpha
Helix 3	AA3	A	122	130	Right-handed alpha
Helix 4	AA4	A	135	138	Right-handed 310
Helix 5	AA5	A	139	155	Right-handed alpha
Helix 6	AA6	A	173	177	Right-handed 310
Helix 7	AA7	A	192	211	Right-handed alpha
Helix 8	AA8	A	216	229	Right-handed alpha
Helix 9	AA9	A	231	246	Right-handed alpha
Helix 10	AB1	B	25	36	Right-handed alpha
Helix 11	AB2	B	44	48	Right-handed 310
Helix 12	AB3	B	50	67	Right-handed alpha
Helix 13	AB4	B	74	82	Right-handed alpha
Helix 14	AB5	B	88	96	Right-handed alpha
Helix 15	AB6	B	118	124	Right-handed alpha
Helix 16	AB7	B	132	136	Right-handed 310
Helix 17	AB8	B	141	150	Right-handed alpha
Helix 18	AB9	B	152	157	Right-handed alpha
Helix 19	AC1	B	160	170	Right-handed alpha
Helix 20	AC2	B	171	175	Right-handed 310
Helix 21	AC3	C	19	35	Right-handed alpha
Helix 22	AC4	C	69	93	Right-handed alpha
Helix 23	AC5	C	122	126	Right-handed alpha
Helix 24	AC6	C	128	133	Right-handed alpha
Helix 25	AC7	C	135	138	Right-handed 310
Helix 26	AC8	C	139	155	Right-handed alpha
Helix 27	AC9	C	192	211	Right-handed alpha
Helix 28	AD1	C	216	229	Right-handed alpha
Helix 29	AD2	C	231	246	Right-handed alpha
Helix 30	AD3	D	25	36	Right-handed alpha
Helix 31	AD4	D	44	48	Right-handed 310
Helix 32	AD5	D	50	67	Right-handed alpha
Helix 33	AD6	D	74	82	Right-handed alpha
Helix 34	AD7	D	88	97	Right-handed alpha
Helix 35	AD8	D	118	123	Right-handed alpha
Helix 36	AD9	D	124	126	Right-handed 310
Helix 37	AE1	D	132	139	Right-handed 310
Helix 38	AE2	D	141	150	Right-handed alpha
Helix 39	AE3	D	152	157	Right-handed alpha
Helix 40	AE4	D	160	170	Right-handed alpha
Helix 41	AE5	D	171	175	Right-handed 310

There are 10 sheets in PDB entry 7SZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	46	52	anti-parallel
Strand 3	A	55	61	anti-parallel
Strand 4	A	110	114	anti-parallel
Strand 5	A	101	105	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	168	171	anti-parallel
Strand 3	A	178	181	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	188	189	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	13	21	anti-parallel
Strand 3	B	105	112	anti-parallel
Strand 4	B	41	43	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	13	21	anti-parallel
Strand 3	B	129	131	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	55	61	anti-parallel
Strand 4	C	110	114	anti-parallel
Strand 5	C	101	105	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	168	171	anti-parallel
Strand 3	C	178	181	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	188	189	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	13	21	anti-parallel
Strand 3	D	105	112	anti-parallel
Strand 4	D	41	43	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	13	21	anti-parallel
Strand 3	D	129	131	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SZD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SZD