Analysis of interatomic Contacts of Structural Units in PDB entry:
7T1H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7T1H entry

There are 2 chains in PDB entry 7T1H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 6SER 361
B
 THR 5SER 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7T1H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 67Right-handed alpha
Helix 2
AA2
A
70 72Right-handed 310
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
86 94Right-handed alpha
Helix 5
AA5
A
104 120Right-handed alpha
Helix 6
AA6
A
180 193Right-handed alpha
Helix 7
AA7
A
196 206Right-handed alpha
Helix 8
AA8
A
208 212Right-handed 310
Helix 9
AA9
A
216 221Right-handed alpha
Helix 10
AB1
A
262 271Right-handed alpha
Helix 11
AB2
A
275 302Right-handed alpha
Helix 12
AB3
A
317 332Right-handed alpha
Helix 13
AB4
A
343 345Right-handed 310
Helix 14
AB5
A
346 361Right-handed alpha
Helix 15
AB6
B
51 67Right-handed alpha
Helix 16
AB7
B
70 72Right-handed 310
Helix 17
AB8
B
81 86Right-handed alpha
Helix 18
AB9
B
86 94Right-handed alpha
Helix 19
AC1
B
104 120Right-handed alpha
Helix 20
AC2
B
180 193Right-handed alpha
Helix 21
AC3
B
196 207Right-handed alpha
Helix 22
AC4
B
208 212Right-handed 310
Helix 23
AC5
B
216 220Right-handed alpha
Helix 24
AC6
B
266 271Right-handed alpha
Helix 25
AC7
B
276 302Right-handed alpha
Helix 26
AC8
B
317 333Right-handed alpha
Helix 27
AC9
B
343 345Right-handed 310
Helix 28
AD1
B
346 356Right-handed alpha
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There are 7 sheets in PDB entry 7T1H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
29 34anti-parallel
Strand 4
A
19 25anti-parallel
Strand 5
A
74 79parallel
Strand 6
A
99 102parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
306 311parallel
Strand 5
A
151 156parallel
Strand 6
A
160 167anti-parallel
Strand 7
A
170 177anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
234 236anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
B
274 275anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
41 48anti-parallel
Strand 3
B
29 34anti-parallel
Strand 4
B
19 25anti-parallel
Strand 5
B
74 79parallel
Strand 6
B
99 102parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 136first strand
Strand 2
B
124 128anti-parallel
Strand 3
B
337 341anti-parallel
Strand 4
B
306 311parallel
Strand 5
B
151 156parallel
Strand 6
B
160 167anti-parallel
Strand 7
B
170 177anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
234 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il