Analysis of interatomic Contacts of Structural Units in PDB entry:
7T1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7T1M entry

There is 1 chain in PDB entry 7T1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 22ASN 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7T1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 59Right-handed alpha
Helix 2
AA2
A
72 74Right-handed 310
Helix 3
AA3
A
75 84Right-handed alpha
Helix 4
AA4
A
91 99Right-handed alpha
Helix 5
AA5
A
131 136Right-handed alpha
Helix 6
AA6
A
147 154Right-handed alpha
Helix 7
AA7
A
161 166Right-handed alpha
Helix 8
AA8
A
173 184Right-handed alpha
Helix 9
AA9
A
192 198Right-handed alpha
Helix 10
AB1
A
230 243Right-handed alpha
Helix 11
AB2
A
244 246Right-handed 310
Helix 12
AB3
A
247 257Right-handed alpha
Helix 13
AB4
A
266 269Right-handed 310
Helix 14
AB5
A
270 279Right-handed alpha
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There are 3 sheets in PDB entry 7T1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
27 32parallel
Strand 3
A
87 89parallel
Strand 4
A
222 225anti-parallel
Strand 5
A
104 111anti-parallel
Strand 6
A
261 264anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
217 218anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
139 142parallel
Strand 3
A
188 191parallel
Strand 4
A
121 125anti-parallel
Strand 5
A
208 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il