Analysis of interatomic Contacts of Structural Units in PDB entry:
7T1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7T1Y entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 7T1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2TRP 159
B
 THR 263MET 706
C
 HIS 241GLU 243
C
 PRO 245THR 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7T1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 22Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
51 64Right-handed alpha
Helix 4
AA4
A
86 93Right-handed alpha
Helix 5
AA5
A
96 111Right-handed alpha
Helix 6
AA6
A
112 129Right-handed alpha
Helix 7
AA7
A
131 140Right-handed alpha
Helix 8
AA8
A
146 157Right-handed alpha
Helix 9
AA9
B
264 273Right-handed alpha
Helix 10
AB1
B
279 284Right-handed alpha
Helix 11
AB2
B
285 294Right-handed alpha
Helix 12
AB3
B
297 305Right-handed alpha
Helix 13
AB4
B
308 315Right-handed alpha
Helix 14
AB5
B
317 328Right-handed alpha
Helix 15
AB6
B
349 368Right-handed alpha
Helix 16
AB7
B
665 669Right-handed 310
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There are 9 sheets in PDB entry 7T1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
3 8anti-parallel
Strand 3
A
46 47parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 377first strand
Strand 2
B
696 701anti-parallel
Strand 3
B
681 687anti-parallel
Strand 4
B
671 677anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 390first strand
Strand 2
B
393 398anti-parallel
Strand 3
B
403 407anti-parallel
Strand 4
B
413 417anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 429first strand
Strand 2
B
433 438anti-parallel
Strand 3
B
443 447anti-parallel
Strand 4
B
452 457anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 469first strand
Strand 2
B
473 478anti-parallel
Strand 3
B
482 487anti-parallel
Strand 4
B
493 498anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 509first strand
Strand 2
B
514 518anti-parallel
Strand 3
B
522 527anti-parallel
Strand 4
B
532 538anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 549first strand
Strand 2
B
553 558anti-parallel
Strand 3
B
563 567anti-parallel
Strand 4
B
573 577anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
584 590first strand
Strand 2
B
593 598anti-parallel
Strand 3
B
603 607anti-parallel
Strand 4
B
613 617anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 632first strand
Strand 2
B
636 641anti-parallel
Strand 3
B
645 650anti-parallel
Strand 4
B
656 662anti-parallel
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