Analysis of interatomic Contacts of Structural Units in PDB entry:
7T54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7T54 entry

There are 2 chains in PDB entry 7T54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8GLU 722
B
 LYS 8GLU 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 7T54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 33Right-handed alpha
Helix 2
AA2
A
38 47Right-handed alpha
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
94 96Right-handed 310
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
159 163Right-handed alpha
Helix 7
AA7
A
165 197Right-handed alpha
Helix 8
AA8
A
202 250Right-handed alpha
Helix 9
AA9
A
254 261Right-handed alpha
Helix 10
AB1
A
263 272Right-handed alpha
Helix 11
AB2
A
272 305Right-handed alpha
Helix 12
AB3
A
306 326Right-handed alpha
Helix 13
AB4
A
326 354Right-handed alpha
Helix 14
AB5
A
354 361Right-handed alpha
Helix 15
AB6
A
363 418Right-handed alpha
Helix 16
AB7
A
421 446Right-handed alpha
Helix 17
AB8
A
448 463Right-handed alpha
Helix 18
AB9
A
526 533Right-handed alpha
Helix 19
AC1
A
549 553Right-handed 310
Helix 20
AC2
A
554 561Right-handed alpha
Helix 21
AC3
A
576 582Right-handed alpha
Helix 22
AC4
A
588 599Right-handed alpha
Helix 23
AC5
A
602 608Right-handed alpha
Helix 24
AC6
A
624 639Right-handed alpha
Helix 25
AC7
A
656 669Right-handed alpha
Helix 26
AC8
A
703 711Right-handed alpha
Helix 27
AC9
A
712 722Right-handed alpha
Helix 28
AD1
B
20 34Right-handed alpha
Helix 29
AD2
B
38 47Right-handed alpha
Helix 30
AD3
B
54 66Right-handed alpha
Helix 31
AD4
B
94 96Right-handed 310
Helix 32
AD5
B
124 132Right-handed alpha
Helix 33
AD6
B
159 163Right-handed alpha
Helix 34
AD7
B
165 197Right-handed alpha
Helix 35
AD8
B
202 252Right-handed alpha
Helix 36
AD9
B
254 261Right-handed alpha
Helix 37
AE1
B
263 272Right-handed alpha
Helix 38
AE2
B
272 305Right-handed alpha
Helix 39
AE3
B
306 354Right-handed alpha
Helix 40
AE4
B
354 361Right-handed alpha
Helix 41
AE5
B
363 418Right-handed alpha
Helix 42
AE6
B
421 446Right-handed alpha
Helix 43
AE7
B
448 460Right-handed alpha
Helix 44
AE8
B
465 470Right-handed alpha
Helix 45
AE9
B
526 533Right-handed alpha
Helix 46
AF1
B
549 553Right-handed 310
Helix 47
AF2
B
554 561Right-handed alpha
Helix 48
AF3
B
576 582Right-handed alpha
Helix 49
AF4
B
588 599Right-handed alpha
Helix 50
AF5
B
602 607Right-handed alpha
Helix 51
AF6
B
624 639Right-handed alpha
Helix 52
AF7
B
653 657Right-handed 310
Helix 53
AF8
B
658 669Right-handed alpha
Helix 54
AF9
B
703 711Right-handed alpha
Helix 55
AG1
B
712 722Right-handed alpha
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There are 11 sheets in PDB entry 7T54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
140 141anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
136 137anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
98 103anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
119 123anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 505first strand
Strand 2
A
486 493anti-parallel
Strand 3
A
540 545anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 646first strand
Strand 2
A
673 677parallel
Strand 3
A
514 518parallel
Strand 4
A
690 694parallel
Strand 5
A
697 702anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 575first strand
Strand 2
A
615 616anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
136 137anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
98 103anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
121 123anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 505first strand
Strand 2
B
486 493anti-parallel
Strand 3
B
540 545anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
643 646first strand
Strand 2
B
673 677parallel
Strand 3
B
514 518parallel
Strand 4
B
690 694parallel
Strand 5
B
697 702anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
574 575first strand
Strand 2
B
615 616anti-parallel
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