Analysis of interatomic Contacts of Structural Units in PDB entry:
7T5F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7T5F entry

There are 6 chains in PDB entry 7T5F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	SER 425
D	PRO 2	SER 425
C	VAL 2	SER 116
B	SER 0	VAL 116
E	GLN 1	THR 115
F	VAL 2	PHE 73

There are 41 helices in PDB entry 7T5F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	55	60	Right-handed 310
Helix 3	AA3	A	81	101	Right-handed alpha
Helix 4	AA4	A	102	115	Right-handed alpha
Helix 5	AA5	A	183	185	Right-handed 310
Helix 6	AA6	A	206	210	Right-handed 310
Helix 7	AA7	A	213	217	Right-handed 310
Helix 8	AA8	A	223	240	Right-handed alpha
Helix 9	AA9	A	266	273	Right-handed alpha
Helix 10	AB1	A	275	280	Right-handed 310
Helix 11	AB2	A	281	304	Right-handed alpha
Helix 12	AB3	A	316	328	Right-handed alpha
Helix 13	AB4	A	341	355	Right-handed alpha
Helix 14	AB5	A	357	365	Right-handed alpha
Helix 15	AB6	A	400	404	Right-handed 310
Helix 16	AB7	A	406	413	Right-handed 310
Helix 17	AB8	D	24	28	Right-handed 310
Helix 18	AB9	D	55	61	Right-handed 310
Helix 19	AC1	D	81	101	Right-handed alpha
Helix 20	AC2	D	102	115	Right-handed alpha
Helix 21	AC3	D	183	185	Right-handed 310
Helix 22	AC4	D	206	210	Right-handed 310
Helix 23	AC5	D	213	217	Right-handed 310
Helix 24	AC6	D	223	240	Right-handed alpha
Helix 25	AC7	D	266	273	Right-handed alpha
Helix 26	AC8	D	275	280	Right-handed 310
Helix 27	AC9	D	281	306	Right-handed alpha
Helix 28	AD1	D	316	328	Right-handed alpha
Helix 29	AD2	D	341	355	Right-handed alpha
Helix 30	AD3	D	357	366	Right-handed alpha
Helix 31	AD4	D	400	404	Right-handed 310
Helix 32	AD5	D	406	413	Right-handed 310
Helix 33	AD6	C	61	64	Right-handed 310
Helix 34	AD7	C	86	90	Right-handed 310
Helix 35	AD8	B	28	32	Right-handed 310
Helix 36	AD9	B	87	91	Right-handed 310
Helix 37	AE1	E	28	32	Right-handed 310
Helix 38	AE2	E	62	65	Right-handed 310
Helix 39	AE3	E	87	91	Right-handed 310
Helix 40	AE4	F	61	64	Right-handed 310
Helix 41	AE5	F	86	90	Right-handed 310

There are 24 sheets in PDB entry 7T5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	155	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	43	46	anti-parallel
Strand 6	A	158	161	parallel
Strand 7	A	191	194	parallel
Strand 8	A	171	173	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	308	309	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	180	181	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	381	383	anti-parallel
Strand 3	A	421	423	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	220	221	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	264	265	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	338	339	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	155	first strand
Strand 2	D	137	141	anti-parallel
Strand 3	D	19	23	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	43	46	anti-parallel
Strand 6	D	158	161	parallel
Strand 7	D	191	194	parallel
Strand 8	D	171	173	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	308	309	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	180	181	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	200	first strand
Strand 2	D	381	383	anti-parallel
Strand 3	D	421	423	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	220	221	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	264	265	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	332	first strand
Strand 2	D	338	339	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	91	98	anti-parallel
Strand 5	C	106	107	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	91	98	anti-parallel
Strand 5	C	111	113	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	69	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	112	115	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	69	73	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	46	51	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	92	98	anti-parallel
Strand 5	E	112	114	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	45	52	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	91	98	anti-parallel
Strand 5	F	106	107	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	45	52	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	91	98	anti-parallel
Strand 5	F	111	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7T5F

Analysis of interatomic Contacts of Structural Units in PDB entry:
7T5F