Analysis of interatomic Contacts of Structural Units in PDB entry:
7T5Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7T5Q entry

There are 11 chains in PDB entry 7T5Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	TYR 400
B	ASP 2	LEU 386
C	SER 2	LYS 358
D	MET 1	ASP 283
E	PRO 2	GLY 175
F	ALA 3	PHE 168
G	ILE 78	ARG 148
H	THR 6	GLU 72
H	GLY 74	PHE 375
I	VAL 8	HIS 324
J	SER 2	ASP 333

There are103 helices in PDB entry 7T5Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	59	Right-handed 310
Helix 2	AA2	A	64	67	Right-handed 310
Helix 3	AA3	A	85	99	Right-handed alpha
Helix 4	AA4	A	104	107	Right-handed 310
Helix 5	AA5	A	119	135	Right-handed alpha
Helix 6	AA6	A	143	151	Right-handed alpha
Helix 7	AA7	A	152	156	Right-handed 310
Helix 8	AA8	A	196	209	Right-handed alpha
Helix 9	AA9	A	219	231	Right-handed alpha
Helix 10	AB1	A	237	248	Right-handed alpha
Helix 11	AB2	A	248	253	Right-handed alpha
Helix 12	AB3	A	278	283	Right-handed 310
Helix 13	AB4	A	284	288	Right-handed 310
Helix 14	AB5	A	295	305	Right-handed alpha
Helix 15	AB6	A	306	307	Right-handed 310
Helix 16	AB7	A	308	310	Right-handed 310
Helix 17	AB8	A	311	318	Right-handed alpha
Helix 18	AB9	A	323	327	Right-handed 310
Helix 19	AC1	A	330	354	Right-handed alpha
Helix 20	AC2	A	375	386	Right-handed alpha
Helix 21	AC3	A	387	393	Right-handed 310
Helix 22	AC4	B	59	64	Right-handed alpha
Helix 23	AC5	B	84	93	Right-handed alpha
Helix 24	AC6	B	116	131	Right-handed alpha
Helix 25	AC7	B	141	148	Right-handed alpha
Helix 26	AC8	B	175	179	Right-handed 310
Helix 27	AC9	B	185	199	Right-handed alpha
Helix 28	AD1	B	209	220	Right-handed alpha
Helix 29	AD2	B	226	237	Right-handed alpha
Helix 30	AD3	B	255	265	Right-handed 310
Helix 31	AD4	B	267	272	Right-handed 310
Helix 32	AD5	B	276	287	Right-handed alpha
Helix 33	AD6	B	288	289	Right-handed 310
Helix 34	AD7	B	290	292	Right-handed 310
Helix 35	AD8	B	293	299	Right-handed alpha
Helix 36	AD9	B	305	309	Right-handed 310
Helix 37	AE1	B	312	325	Right-handed alpha
Helix 38	AE2	B	352	365	Right-handed alpha
Helix 39	AE3	B	375	381	Right-handed alpha
Helix 40	AE4	C	335	339	Right-handed 310
Helix 41	AE5	D	8	25	Right-handed alpha
Helix 42	AE6	D	37	41	Right-handed 310
Helix 43	AE7	D	63	70	Right-handed alpha
Helix 44	AE8	D	71	81	Right-handed alpha
Helix 45	AE9	D	82	84	Right-handed 310
Helix 46	AF1	D	106	114	Right-handed alpha
Helix 47	AF2	D	115	135	Right-handed alpha
Helix 48	AF3	D	171	183	Right-handed alpha
Helix 49	AF4	D	184	192	Right-handed alpha
Helix 50	AF5	D	206	211	Right-handed alpha
Helix 51	AF6	D	236	245	Right-handed alpha
Helix 52	AF7	D	247	279	Right-handed alpha
Helix 53	AF8	E	40	48	Right-handed alpha
Helix 54	AF9	E	48	53	Right-handed alpha
Helix 55	AG1	E	64	82	Right-handed alpha
Helix 56	AG2	E	87	99	Right-handed alpha
Helix 57	AG3	E	113	117	Right-handed 310
Helix 58	AG4	E	124	149	Right-handed alpha
Helix 59	AG5	E	167	171	Right-handed 310
Helix 60	AG6	F	4	18	Right-handed alpha
Helix 61	AG7	F	43	47	Right-handed 310
Helix 62	AG8	F	80	97	Right-handed alpha
Helix 63	AG9	F	120	125	Right-handed alpha
Helix 64	AH1	F	128	168	Right-handed alpha
Helix 65	AH2	G	79	86	Right-handed alpha
Helix 66	AH3	G	101	114	Right-handed alpha
Helix 67	AH4	G	120	137	Right-handed alpha
Helix 68	AH5	G	137	146	Right-handed alpha
Helix 69	AH6	H	55	61	Right-handed alpha
Helix 70	AH7	H	78	92	Right-handed alpha
Helix 71	AH8	H	112	125	Right-handed alpha
Helix 72	AH9	H	137	146	Right-handed alpha
Helix 73	AI1	H	181	197	Right-handed alpha
Helix 74	AI2	H	202	204	Right-handed 310
Helix 75	AI3	H	205	216	Right-handed alpha
Helix 76	AI4	H	222	233	Right-handed alpha
Helix 77	AI5	H	251	255	Right-handed 310
Helix 78	AI6	H	257	262	Right-handed 310
Helix 79	AI7	H	276	284	Right-handed alpha
Helix 80	AI8	H	289	295	Right-handed alpha
Helix 81	AI9	H	308	319	Right-handed alpha
Helix 82	AJ1	H	334	336	Right-handed 310
Helix 83	AJ2	H	337	348	Right-handed alpha
Helix 84	AJ3	H	349	354	Right-handed 310
Helix 85	AJ4	H	359	366	Right-handed alpha
Helix 86	AJ5	H	368	372	Right-handed 310
Helix 87	AJ6	I	9	23	Right-handed alpha
Helix 88	AJ7	I	29	40	Right-handed alpha
Helix 89	AJ8	I	42	50	Right-handed alpha
Helix 90	AJ9	I	50	62	Right-handed alpha
Helix 91	AK1	I	117	134	Right-handed alpha
Helix 92	AK2	I	220	249	Right-handed alpha
Helix 93	AK3	I	270	276	Right-handed alpha
Helix 94	AK4	I	312	324	Right-handed alpha
Helix 95	AK5	J	3	16	Right-handed alpha
Helix 96	AK6	J	17	19	Right-handed 310
Helix 97	AK7	J	20	32	Right-handed alpha
Helix 98	AK8	J	35	43	Right-handed alpha
Helix 99	AK9	J	90	112	Right-handed alpha
Helix 100	AL1	J	208	231	Right-handed alpha
Helix 101	AL2	J	235	244	Right-handed alpha
Helix 102	AL3	J	250	274	Right-handed alpha
Helix 103	AL4	J	292	302	Right-handed alpha

There are 32 sheets in PDB entry 7T5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	109	113	parallel
Strand 5	A	138	142	parallel
Strand 6	A	395	396	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	35	37	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	82	83	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	191	193	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	165	169	anti-parallel
Strand 4	A	319	322	parallel
Strand 5	A	367	368	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	266	271	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	17	22	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	106	111	parallel
Strand 5	B	135	140	parallel
Strand 6	B	373	374	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	36	38	anti-parallel
Strand 3	B	69	71	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	78	79	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	154	158	anti-parallel
Strand 4	B	301	304	parallel
Strand 5	B	344	345	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	251	254	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	351	356	anti-parallel
Strand 3	C	342	347	anti-parallel
Strand 4	C	327	332	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	23	25	anti-parallel
Strand 3	C	32	37	anti-parallel
Strand 4	C	42	48	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	61	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	76	81	anti-parallel
Strand 4	C	86	90	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	104	first strand
Strand 2	C	110	115	anti-parallel
Strand 3	C	119	126	anti-parallel
Strand 4	C	131	137	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	194	198	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	212	first strand
Strand 2	C	218	223	anti-parallel
Strand 3	C	227	232	anti-parallel
Strand 4	C	238	243	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	254	first strand
Strand 2	C	259	264	anti-parallel
Strand 3	C	270	274	anti-parallel
Strand 4	C	280	285	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	43	46	anti-parallel
Strand 3	D	54	59	anti-parallel
Strand 4	D	93	98	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	152	156	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	220	227	anti-parallel
Strand 5	D	197	202	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	56	first strand
Strand 2	F	59	64	anti-parallel
Strand 3	F	69	74	anti-parallel
Strand 4	F	114	119	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	32	first strand
Strand 2	H	16	20	anti-parallel
Strand 3	H	8	11	anti-parallel
Strand 4	H	103	107	parallel
Strand 5	H	135	136	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	36	first strand
Strand 2	H	53	54	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	75	76	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	132	first strand
Strand 2	H	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	170	first strand
Strand 2	H	160	166	anti-parallel
Strand 3	H	176	178	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	170	first strand
Strand 2	H	160	166	anti-parallel
Strand 3	H	150	153	anti-parallel
Strand 4	H	297	298	parallel
Strand 5	H	329	330	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	238	241	first strand
Strand 2	H	247	250	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	66	first strand
Strand 2	I	73	75	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	86	87	first strand
Strand 2	I	95	98	anti-parallel
Strand 3	I	105	109	anti-parallel

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There are 10 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	140	148	first strand
Strand 2	I	151	161	anti-parallel
Strand 3	I	169	180	anti-parallel
Strand 4	I	188	198	anti-parallel
Strand 5	I	203	214	anti-parallel
Strand 6	J	186	202	anti-parallel
Strand 7	J	164	179	anti-parallel
Strand 8	J	147	156	anti-parallel
Strand 9	J	129	137	anti-parallel
Strand 10	J	116	121	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	51	first strand
Strand 2	J	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7T5Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
7T5Q