Analysis of interatomic Contacts of Structural Units in PDB entry:
7T62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7T62 entry

There are 2 chains in PDB entry 7T62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 19	ARG 579
B	GLU 1	GLU 433

There are 27 helices in PDB entry 7T62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	70	130	Right-handed alpha
Helix 4	AA4	A	131	136	Right-handed alpha
Helix 5	AA5	A	137	153	Right-handed alpha
Helix 6	AA6	A	158	179	Right-handed alpha
Helix 7	AA7	A	185	200	Right-handed alpha
Helix 8	AA8	A	208	242	Right-handed alpha
Helix 9	AA9	A	247	258	Right-handed alpha
Helix 10	AB1	A	258	264	Right-handed alpha
Helix 11	AB2	A	272	284	Right-handed alpha
Helix 12	AB3	A	285	288	Right-handed 310
Helix 13	AB4	A	289	307	Right-handed alpha
Helix 14	AB5	A	312	334	Right-handed alpha
Helix 15	AB6	A	334	346	Right-handed alpha
Helix 16	AB7	A	380	401	Right-handed alpha
Helix 17	AB8	A	403	419	Right-handed alpha
Helix 18	AB9	A	445	450	Right-handed alpha
Helix 19	AC1	A	451	453	Right-handed 310
Helix 20	AC2	A	464	485	Right-handed alpha
Helix 21	AC3	A	534	538	Right-handed 310
Helix 22	AC4	B	87	91	Right-handed 310
Helix 23	AC5	B	166	168	Right-handed 310
Helix 24	AC6	B	210	213	Right-handed 310
Helix 25	AC7	B	299	302	Right-handed 310
Helix 26	AC8	B	341	347	Right-handed alpha
Helix 27	AC9	B	403	408	Right-handed alpha

There are 13 sheets in PDB entry 7T62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	435	436	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	514	first strand
Strand 2	A	554	559	anti-parallel
Strand 3	A	566	570	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	117	121	parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	117	121	parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	108	113	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	134	first strand
Strand 2	B	145	155	anti-parallel
Strand 3	B	185	194	anti-parallel
Strand 4	B	173	175	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	134	first strand
Strand 2	B	145	155	anti-parallel
Strand 3	B	185	194	anti-parallel
Strand 4	B	179	180	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	204	209	anti-parallel
Strand 3	B	214	219	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	240	246	anti-parallel
Strand 3	B	290	295	anti-parallel
Strand 4	B	282	287	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	322	326	parallel
Strand 3	B	304	310	anti-parallel
Strand 4	B	253	259	anti-parallel
Strand 5	B	264	269	anti-parallel
Strand 6	B	273	274	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	322	326	parallel
Strand 3	B	304	310	anti-parallel
Strand 4	B	317	318	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	338	first strand
Strand 2	B	349	359	anti-parallel
Strand 3	B	393	402	anti-parallel
Strand 4	B	379	383	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	375	first strand
Strand 2	B	365	370	anti-parallel
Strand 3	B	411	417	anti-parallel
Strand 4	B	425	430	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7T62

Analysis of interatomic Contacts of Structural Units in PDB entry:
7T62