Analysis of interatomic Contacts of Structural Units in PDB entry:
7T78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7T78 entry

There are 2 chains in PDB entry 7T78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 13ALA 460
B
 ALA 12MET 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7T78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 21Right-handed alpha
Helix 2
AA2
A
22 24Right-handed 310
Helix 3
AA3
A
26 46Right-handed alpha
Helix 4
AA4
A
111 117Right-handed alpha
Helix 5
AA5
A
118 137Right-handed alpha
Helix 6
AA6
A
180 193Right-handed alpha
Helix 7
AA7
A
204 215Right-handed alpha
Helix 8
AA8
A
256 260Right-handed 310
Helix 9
AA9
A
271 280Right-handed alpha
Helix 10
AB1
A
289 293Right-handed 310
Helix 11
AB2
A
294 312Right-handed alpha
Helix 12
AB3
A
315 319Right-handed 310
Helix 13
AB4
A
331 340Right-handed alpha
Helix 14
AB5
A
345 355Right-handed alpha
Helix 15
AB6
A
360 398Right-handed alpha
Helix 16
AB7
A
410 416Right-handed alpha
Helix 17
AB8
A
418 431Right-handed alpha
Helix 18
AB9
A
443 457Right-handed alpha
Helix 19
AC1
B
13 21Right-handed alpha
Helix 20
AC2
B
22 24Right-handed 310
Helix 21
AC3
B
26 46Right-handed alpha
Helix 22
AC4
B
111 117Right-handed alpha
Helix 23
AC5
B
118 137Right-handed alpha
Helix 24
AC6
B
180 193Right-handed alpha
Helix 25
AC7
B
204 217Right-handed alpha
Helix 26
AC8
B
256 260Right-handed 310
Helix 27
AC9
B
271 280Right-handed alpha
Helix 28
AD1
B
289 293Right-handed 310
Helix 29
AD2
B
294 312Right-handed alpha
Helix 30
AD3
B
315 319Right-handed 310
Helix 31
AD4
B
331 340Right-handed alpha
Helix 32
AD5
B
345 355Right-handed alpha
Helix 33
AD6
B
360 398Right-handed alpha
Helix 34
AD7
B
410 416Right-handed alpha
Helix 35
AD8
B
418 431Right-handed alpha
Helix 36
AD9
B
443 461Right-handed alpha
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There are 6 sheets in PDB entry 7T78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
230 237anti-parallel
Strand 4
A
220 226anti-parallel
Strand 5
A
402 409parallel
Strand 6
A
434 440parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 109first strand
Strand 2
A
83 92anti-parallel
Strand 3
A
72 79anti-parallel
Strand 4
A
144 150parallel
Strand 5
A
197 203parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 158first strand
Strand 2
A
161 164anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
250 254anti-parallel
Strand 3
B
230 237anti-parallel
Strand 4
B
220 226anti-parallel
Strand 5
B
402 409parallel
Strand 6
B
434 440parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 109first strand
Strand 2
B
83 92anti-parallel
Strand 3
B
72 79anti-parallel
Strand 4
B
144 150parallel
Strand 5
B
197 203parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 158first strand
Strand 2
B
161 164anti-parallel
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