Analysis of interatomic Contacts of Structural Units in PDB entry:
7T88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7T88 entry

There is 1 chain in PDB entry 7T88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 387GLN 713
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7T88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
388 404Right-handed alpha
Helix 2
AA2
A
414 427Right-handed alpha
Helix 3
AA3
A
437 447Right-handed alpha
Helix 4
AA4
A
460 465Right-handed alpha
Helix 5
AA5
A
468 476Right-handed alpha
Helix 6
AA6
A
477 480Right-handed 310
Helix 7
AA7
A
482 490Right-handed alpha
Helix 8
AA8
A
492 503Right-handed alpha
Helix 9
AA9
A
516 528Right-handed alpha
Helix 10
AB1
A
562 580Right-handed alpha
Helix 11
AB2
A
599 616Right-handed alpha
Helix 12
AB3
A
626 632Right-handed alpha
Helix 13
AB4
A
632 640Right-handed alpha
Helix 14
AB5
A
656 671Right-handed alpha
Helix 15
AB6
A
695 713Right-handed alpha
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There are 2 sheets in PDB entry 7T88. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 459first strand
Strand 2
A
431 435parallel
Strand 3
A
406 409parallel
Strand 4
A
508 511parallel
Strand 5
A
687 689parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 625first strand
Strand 2
A
585 589parallel
Strand 3
A
651 653parallel
Strand 4
A
549 553parallel
Strand 5
A
538 544anti-parallel
Strand 6
A
674 681anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il