Analysis of interatomic Contacts of Structural Units in PDB entry:
7T8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7T8K entry

There are 4 chains in PDB entry 7T8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3SER 288
B
 ALA 3LEU 279
C
 A 1 T 25
D
 A 1 T 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 7T8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 23Right-handed alpha
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
37 52Right-handed alpha
Helix 4
AA4
A
80 92Right-handed alpha
Helix 5
AA5
A
117 131Right-handed alpha
Helix 6
AA6
A
181 183Right-handed 310
Helix 7
AA7
A
196 199Right-handed 310
Helix 8
AA8
A
200 205Right-handed alpha
Helix 9
AA9
A
218 230Right-handed alpha
Helix 10
AB1
A
244 253Right-handed alpha
Helix 11
AB2
A
257 262Right-handed alpha
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
B
5 23Right-handed alpha
Helix 14
AB5
B
26 35Right-handed alpha
Helix 15
AB6
B
37 52Right-handed alpha
Helix 16
AB7
B
80 92Right-handed alpha
Helix 17
AB8
B
117 131Right-handed alpha
Helix 18
AB9
B
181 183Right-handed 310
Helix 19
AC1
B
196 199Right-handed 310
Helix 20
AC2
B
200 205Right-handed alpha
Helix 21
AC3
B
218 230Right-handed alpha
Helix 22
AC4
B
244 253Right-handed alpha
Helix 23
AC5
B
259 263Right-handed 310
Helix 24
AC6
B
272 277Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7T8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
106 109anti-parallel
Strand 3
B
147 158parallel
Strand 4
B
163 169anti-parallel
Strand 5
B
174 179anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
106 109anti-parallel
Strand 3
B
147 158parallel
Strand 4
B
134 138anti-parallel
Strand 5
B
188 189anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 179first strand
Strand 2
A
163 169anti-parallel
Strand 3
A
147 158anti-parallel
Strand 4
A
133 138anti-parallel
Strand 5
A
184 190anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 179first strand
Strand 2
A
163 169anti-parallel
Strand 3
A
147 158anti-parallel
Strand 4
B
106 109parallel
Strand 5
B
99 103anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 241first strand
Strand 2
A
206 213anti-parallel
Strand 3
A
269 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 241first strand
Strand 2
B
206 213anti-parallel
Strand 3
B
269 271anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il