Analysis of interatomic Contacts of Structural Units in PDB entry:
7T9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7T9W entry

There are 15 chains in PDB entry 7T9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1241	LEU 1328
B	THR 1238	ASN 1329
C	GLN 1240	ASN 1329
D	GLN 1240	LEU 1328
E	GLN 1240	LEU 1328
F	LYS 1241	LEU 1328
G	GLN 1240	ASN 1329
H	ILE 1239	ASN 1329
I	LYS 1241	LEU 1328
J	GLN 1240	LEU 1328
K	GLN 1240	LEU 1328
L	LYS 1241	LEU 1328
M	ILE 1239	LEU 1328
N	GLN 1240	ASN 1329
O	GLN 1240	LEU 1301

There are 94 helices in PDB entry 7T9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1273	1283	Right-handed alpha
Helix 2	AA2	A	1293	1299	Right-handed alpha
Helix 3	AA3	A	1303	1308	Right-handed alpha
Helix 4	AA4	A	1309	1312	Right-handed 310
Helix 5	AA5	A	1316	1324	Right-handed alpha
Helix 6	AA6	B	1273	1283	Right-handed alpha
Helix 7	AA7	B	1293	1299	Right-handed alpha
Helix 8	AA8	B	1303	1308	Right-handed alpha
Helix 9	AA9	B	1309	1312	Right-handed 310
Helix 10	AB1	B	1316	1325	Right-handed alpha
Helix 11	AB2	B	1326	1329	Right-handed 310
Helix 12	AB3	C	1273	1284	Right-handed alpha
Helix 13	AB4	C	1293	1299	Right-handed alpha
Helix 14	AB5	C	1303	1308	Right-handed alpha
Helix 15	AB6	C	1309	1312	Right-handed 310
Helix 16	AB7	C	1316	1325	Right-handed alpha
Helix 17	AB8	C	1326	1328	Right-handed 310
Helix 18	AB9	D	1273	1284	Right-handed alpha
Helix 19	AC1	D	1293	1299	Right-handed alpha
Helix 20	AC2	D	1303	1308	Right-handed alpha
Helix 21	AC3	D	1309	1312	Right-handed 310
Helix 22	AC4	D	1316	1325	Right-handed alpha
Helix 23	AC5	D	1326	1328	Right-handed 310
Helix 24	AC6	E	1273	1284	Right-handed alpha
Helix 25	AC7	E	1293	1299	Right-handed alpha
Helix 26	AC8	E	1303	1308	Right-handed alpha
Helix 27	AC9	E	1309	1312	Right-handed 310
Helix 28	AD1	E	1316	1325	Right-handed alpha
Helix 29	AD2	E	1326	1328	Right-handed 310
Helix 30	AD3	F	1273	1283	Right-handed alpha
Helix 31	AD4	F	1293	1299	Right-handed alpha
Helix 32	AD5	F	1303	1308	Right-handed alpha
Helix 33	AD6	F	1309	1312	Right-handed 310
Helix 34	AD7	F	1316	1325	Right-handed alpha
Helix 35	AD8	F	1326	1328	Right-handed 310
Helix 36	AD9	G	1273	1283	Right-handed alpha
Helix 37	AE1	G	1293	1299	Right-handed alpha
Helix 38	AE2	G	1303	1308	Right-handed alpha
Helix 39	AE3	G	1309	1312	Right-handed 310
Helix 40	AE4	G	1316	1325	Right-handed alpha
Helix 41	AE5	G	1326	1328	Right-handed 310
Helix 42	AE6	H	1273	1283	Right-handed alpha
Helix 43	AE7	H	1293	1299	Right-handed alpha
Helix 44	AE8	H	1303	1308	Right-handed alpha
Helix 45	AE9	H	1309	1312	Right-handed 310
Helix 46	AF1	H	1316	1329	Right-handed alpha
Helix 47	AF2	I	1273	1284	Right-handed alpha
Helix 48	AF3	I	1293	1299	Right-handed alpha
Helix 49	AF4	I	1303	1308	Right-handed alpha
Helix 50	AF5	I	1309	1312	Right-handed 310
Helix 51	AF6	I	1316	1325	Right-handed alpha
Helix 52	AF7	I	1326	1328	Right-handed 310
Helix 53	AF8	J	1273	1283	Right-handed alpha
Helix 54	AF9	J	1293	1299	Right-handed alpha
Helix 55	AG1	J	1303	1308	Right-handed alpha
Helix 56	AG2	J	1309	1312	Right-handed 310
Helix 57	AG3	J	1316	1325	Right-handed alpha
Helix 58	AG4	J	1326	1328	Right-handed 310
Helix 59	AG5	K	1273	1284	Right-handed alpha
Helix 60	AG6	K	1293	1299	Right-handed alpha
Helix 61	AG7	K	1303	1308	Right-handed alpha
Helix 62	AG8	K	1309	1312	Right-handed 310
Helix 63	AG9	K	1316	1325	Right-handed alpha
Helix 64	AH1	K	1326	1328	Right-handed 310
Helix 65	AH2	L	1273	1283	Right-handed alpha
Helix 66	AH3	L	1293	1299	Right-handed alpha
Helix 67	AH4	L	1303	1308	Right-handed alpha
Helix 68	AH5	L	1309	1312	Right-handed 310
Helix 69	AH6	L	1316	1325	Right-handed alpha
Helix 70	AH7	L	1326	1328	Right-handed 310
Helix 71	AH8	M	1273	1284	Right-handed alpha
Helix 72	AH9	M	1293	1299	Right-handed alpha
Helix 73	AI1	M	1303	1308	Right-handed alpha
Helix 74	AI2	M	1309	1312	Right-handed 310
Helix 75	AI3	M	1316	1325	Right-handed alpha
Helix 76	AI4	M	1326	1328	Right-handed 310
Helix 77	AI5	N	1273	1283	Right-handed alpha
Helix 78	AI6	N	1293	1299	Right-handed alpha
Helix 79	AI7	N	1303	1308	Right-handed alpha
Helix 80	AI8	N	1309	1312	Right-handed 310
Helix 81	AI9	N	1316	1325	Right-handed alpha
Helix 82	AJ1	N	1326	1328	Right-handed 310
Helix 83	AJ2	O	1273	1284	Right-handed alpha
Helix 84	AJ3	O	1293	1299	Right-handed alpha
Helix 85	AJ4	O	1303	1308	Right-handed alpha
Helix 86	AJ5	O	1309	1312	Right-handed 310
Helix 87	AJ6	O	1316	1325	Right-handed alpha
Helix 88	AJ7	O	1326	1328	Right-handed 310
Helix 89	AJ8	P	1273	1284	Right-handed alpha
Helix 90	AJ9	P	1293	1299	Right-handed alpha
Helix 91	AK1	P	1303	1308	Right-handed alpha
Helix 92	AK2	P	1309	1312	Right-handed 310
Helix 93	AK3	P	1316	1325	Right-handed alpha
Helix 94	AK4	P	1326	1328	Right-handed 310

There are 17 sheets in PDB entry 7T9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1242	1246	first strand
Strand 2	A	1257	1261	parallel
Strand 3	A	1252	1254	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1242	1246	first strand
Strand 2	B	1257	1261	parallel
Strand 3	B	1252	1254	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1242	1246	first strand
Strand 2	C	1257	1261	parallel
Strand 3	C	1252	1254	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1268	1269	first strand
Strand 2	C	1288	1289	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1242	1246	first strand
Strand 2	D	1257	1261	parallel
Strand 3	D	1252	1254	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1242	1246	first strand
Strand 2	E	1257	1261	parallel
Strand 3	E	1252	1254	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1243	1246	first strand
Strand 2	F	1257	1261	parallel
Strand 3	F	1252	1254	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1242	1246	first strand
Strand 2	G	1257	1261	parallel
Strand 3	G	1252	1254	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1242	1246	first strand
Strand 2	H	1257	1261	parallel
Strand 3	H	1252	1254	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1242	1246	first strand
Strand 2	I	1257	1261	parallel
Strand 3	I	1252	1254	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1242	1246	first strand
Strand 2	J	1257	1261	parallel
Strand 3	J	1252	1254	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1242	1244	first strand
Strand 2	K	1257	1259	parallel
Strand 3	K	1252	1254	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1242	1246	first strand
Strand 2	L	1257	1261	parallel
Strand 3	L	1252	1254	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1242	1246	first strand
Strand 2	M	1257	1261	parallel
Strand 3	M	1252	1254	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1242	1246	first strand
Strand 2	N	1257	1261	parallel
Strand 3	N	1252	1254	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	1242	1246	first strand
Strand 2	O	1257	1261	parallel
Strand 3	O	1252	1254	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1242	1246	first strand
Strand 2	P	1257	1261	parallel
Strand 3	P	1252	1254	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7T9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
7T9W