Analysis of interatomic Contacts of Structural Units in PDB entry:
7TAP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TAP entry

There are 15 chains in PDB entry 7TAP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 7	GLU 164
C	SER 16	GLN 213
N	ASP 212	LYS 263
M	MET 1	PHE 71
E	MET 1	VAL 159
O	THR 7	LEU 75
F	MET 1	VAL 159
G	MET 1	VAL 159
H	MET 1	VAL 159
I	MET 1	VAL 159
J	MET 1	VAL 159
K	MET 1	VAL 159
L	MET 1	VAL 159
B	MET 1	TYR 345
A	GLU 3	MET 827

There are112 helices in PDB entry 7TAP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	14	50	Right-handed alpha
Helix 2	AA2	D	51	56	Right-handed 310
Helix 3	AA3	D	57	59	Right-handed 310
Helix 4	AA4	D	60	83	Right-handed alpha
Helix 5	AA5	D	91	127	Right-handed alpha
Helix 6	AA6	D	130	132	Right-handed 310
Helix 7	AA7	D	133	164	Right-handed alpha
Helix 8	AA8	C	17	39	Right-handed alpha
Helix 9	AA9	C	41	45	Right-handed 310
Helix 10	AB1	C	46	54	Right-handed alpha
Helix 11	AB2	C	55	91	Right-handed alpha
Helix 12	AB3	C	95	100	Right-handed alpha
Helix 13	AB4	C	100	123	Right-handed alpha
Helix 14	AB5	C	135	177	Right-handed alpha
Helix 15	AB6	C	179	206	Right-handed alpha
Helix 16	AB7	N	220	246	Right-handed alpha
Helix 17	AB8	N	250	254	Right-handed 310
Helix 18	AB9	M	3	25	Right-handed alpha
Helix 19	AC1	M	29	55	Right-handed alpha
Helix 20	AC2	E	8	44	Right-handed alpha
Helix 21	AC3	E	46	48	Right-handed 310
Helix 22	AC4	E	49	54	Right-handed alpha
Helix 23	AC5	E	54	76	Right-handed alpha
Helix 24	AC6	E	83	120	Right-handed alpha
Helix 25	AC7	E	124	152	Right-handed alpha
Helix 26	AC8	O	8	33	Right-handed alpha
Helix 27	AC9	O	35	40	Right-handed alpha
Helix 28	AD1	O	47	75	Right-handed alpha
Helix 29	AD2	F	8	44	Right-handed alpha
Helix 30	AD3	F	46	50	Right-handed 310
Helix 31	AD4	F	54	76	Right-handed alpha
Helix 32	AD5	F	83	120	Right-handed alpha
Helix 33	AD6	F	124	155	Right-handed alpha
Helix 34	AD7	G	8	44	Right-handed alpha
Helix 35	AD8	G	46	50	Right-handed 310
Helix 36	AD9	G	54	76	Right-handed alpha
Helix 37	AE1	G	83	120	Right-handed alpha
Helix 38	AE2	G	124	155	Right-handed alpha
Helix 39	AE3	H	8	44	Right-handed alpha
Helix 40	AE4	H	46	50	Right-handed 310
Helix 41	AE5	H	54	77	Right-handed alpha
Helix 42	AE6	H	83	120	Right-handed alpha
Helix 43	AE7	H	122	124	Right-handed 310
Helix 44	AE8	H	125	155	Right-handed alpha
Helix 45	AE9	I	8	43	Right-handed alpha
Helix 46	AF1	I	46	50	Right-handed 310
Helix 47	AF2	I	51	53	Right-handed 310
Helix 48	AF3	I	54	77	Right-handed alpha
Helix 49	AF4	I	83	120	Right-handed alpha
Helix 50	AF5	I	124	155	Right-handed alpha
Helix 51	AF6	J	8	44	Right-handed alpha
Helix 52	AF7	J	46	50	Right-handed 310
Helix 53	AF8	J	54	76	Right-handed alpha
Helix 54	AF9	J	83	120	Right-handed alpha
Helix 55	AG1	J	124	155	Right-handed alpha
Helix 56	AG2	K	8	44	Right-handed alpha
Helix 57	AG3	K	46	50	Right-handed 310
Helix 58	AG4	K	54	77	Right-handed alpha
Helix 59	AG5	K	83	120	Right-handed alpha
Helix 60	AG6	K	124	155	Right-handed alpha
Helix 61	AG7	L	8	44	Right-handed alpha
Helix 62	AG8	L	46	50	Right-handed 310
Helix 63	AG9	L	54	76	Right-handed alpha
Helix 64	AH1	L	83	120	Right-handed alpha
Helix 65	AH2	L	124	155	Right-handed alpha
Helix 66	AH3	B	2	7	Right-handed alpha
Helix 67	AH4	B	10	23	Right-handed alpha
Helix 68	AH5	B	26	35	Right-handed alpha
Helix 69	AH6	B	38	48	Right-handed alpha
Helix 70	AH7	B	64	86	Right-handed alpha
Helix 71	AH8	B	89	116	Right-handed alpha
Helix 72	AH9	B	119	126	Right-handed alpha
Helix 73	AI1	B	128	132	Right-handed 310
Helix 74	AI2	B	136	141	Right-handed 310
Helix 75	AI3	B	144	152	Right-handed alpha
Helix 76	AI4	B	158	162	Right-handed 310
Helix 77	AI5	B	173	199	Right-handed alpha
Helix 78	AI6	B	203	230	Right-handed alpha
Helix 79	AI7	B	234	240	Right-handed alpha
Helix 80	AI8	B	250	258	Right-handed alpha
Helix 81	AI9	B	261	272	Right-handed alpha
Helix 82	AJ1	B	273	276	Right-handed 310
Helix 83	AJ2	B	283	300	Right-handed alpha
Helix 84	AJ3	B	306	332	Right-handed alpha
Helix 85	AJ4	A	23	37	Right-handed alpha
Helix 86	AJ5	A	49	53	Right-handed 310
Helix 87	AJ6	A	55	79	Right-handed alpha
Helix 88	AJ7	A	103	147	Right-handed alpha
Helix 89	AJ8	A	148	153	Right-handed 310
Helix 90	AJ9	A	193	208	Right-handed alpha
Helix 91	AK1	A	242	256	Right-handed alpha
Helix 92	AK2	A	266	325	Right-handed alpha
Helix 93	AK3	A	343	361	Right-handed alpha
Helix 94	AK4	A	386	398	Right-handed alpha
Helix 95	AK5	A	407	424	Right-handed alpha
Helix 96	AK6	A	425	442	Right-handed alpha
Helix 97	AK7	A	442	449	Right-handed alpha
Helix 98	AK8	A	452	461	Right-handed alpha
Helix 99	AK9	A	461	480	Right-handed alpha
Helix 100	AL1	A	519	523	Right-handed 310
Helix 101	AL2	A	527	562	Right-handed alpha
Helix 102	AL3	A	564	571	Right-handed alpha
Helix 103	AL4	A	571	596	Right-handed alpha
Helix 104	AL5	A	597	602	Right-handed alpha
Helix 105	AL6	A	607	618	Right-handed alpha
Helix 106	AL7	A	629	659	Right-handed alpha
Helix 107	AL8	A	707	733	Right-handed alpha
Helix 108	AL9	A	734	755	Right-handed alpha
Helix 109	AM1	A	756	761	Right-handed 310
Helix 110	AM2	A	762	784	Right-handed alpha
Helix 111	AM3	A	787	803	Right-handed alpha
Helix 112	AM4	A	805	810	Right-handed alpha

There are 7 sheets in PDB entry 7TAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	64	first strand
Strand 2	A	506	507	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	327	329	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	14	22	anti-parallel
Strand 4	A	369	371	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	217	first strand
Strand 2	A	233	239	anti-parallel
Strand 3	A	186	192	anti-parallel
Strand 4	A	258	261	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	224	first strand
Strand 2	A	229	231	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	815	816	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	509	510	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TAP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TAP