Analysis of interatomic Contacts of Structural Units in PDB entry:
7TB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TB5 entry

There is 1 chain in PDB entry 7TB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16GLN 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7TB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 38Right-handed alpha
Helix 2
AA2
A
42 51Right-handed alpha
Helix 3
AA3
A
53 68Right-handed alpha
Helix 4
AA4
A
91 97Right-handed 310
Helix 5
AA5
A
98 107Right-handed alpha
Helix 6
AA6
A
135 149Right-handed alpha
Helix 7
AA7
A
213 216Right-handed 310
Helix 8
AA8
A
217 222Right-handed alpha
Helix 9
AA9
A
235 246Right-handed alpha
Helix 10
AB1
A
261 269Right-handed alpha
Helix 11
AB2
A
280 285Right-handed 310
Helix 12
AB3
A
289 296Right-handed alpha
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There are 3 sheets in PDB entry 7TB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
72 75anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
180 187anti-parallel
Strand 3
A
165 177anti-parallel
Strand 4
A
150 156anti-parallel
Strand 5
A
201 209anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
253 258anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il