Analysis of interatomic Contacts of Structural Units in PDB entry:
7TCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TCD entry

There is 1 chain in PDB entry 7TCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 406ALA 841
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 7TCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
407 411Right-handed 310
Helix 2
AA2
A
431 439Right-handed alpha
Helix 3
AA3
A
441 446Right-handed alpha
Helix 4
AA4
A
449 454Right-handed 310
Helix 5
AA5
A
459 472Right-handed alpha
Helix 6
AA6
A
521 569Right-handed alpha
Helix 7
AA7
A
571 596Right-handed alpha
Helix 8
AA8
A
597 624Right-handed alpha
Helix 9
AA9
A
626 664Right-handed alpha
Helix 10
AB1
A
665 675Right-handed alpha
Helix 11
AB2
A
688 696Right-handed alpha
Helix 12
AB3
A
698 708Right-handed alpha
Helix 13
AB4
A
721 730Right-handed alpha
Helix 14
AB5
A
731 741Right-handed alpha
Helix 15
AB6
A
754 762Right-handed alpha
Helix 16
AB7
A
764 774Right-handed alpha
Helix 17
AB8
A
787 796Right-handed alpha
Helix 18
AB9
A
797 807Right-handed alpha
Helix 19
AC1
A
820 828Right-handed alpha
Helix 20
AC2
A
830 841Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 7TCD.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 430first strand
Strand 2
A
415 418anti-parallel
Strand 3
A
506 516anti-parallel
Strand 4
A
489 500anti-parallel
Strand 5
A
476 483anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il