Analysis of interatomic Contacts of Structural Units in PDB entry:
7TDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TDF entry

There are 2 chains in PDB entry 7TDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 20LYS 686
B
 ARG 20ALA 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 70 helices in PDB entry 7TDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 28Right-handed alpha
Helix 2
AA2
A
29 44Right-handed alpha
Helix 3
AA3
A
48 53Right-handed alpha
Helix 4
AA4
A
58 70Right-handed alpha
Helix 5
AA5
A
70 84Right-handed alpha
Helix 6
AA6
A
85 88Right-handed 310
Helix 7
AA7
A
90 95Right-handed alpha
Helix 8
AA8
A
116 137Right-handed alpha
Helix 9
AA9
A
138 141Right-handed 310
Helix 10
AB1
A
143 148Right-handed alpha
Helix 11
AB2
A
150 172Right-handed alpha
Helix 12
AB3
A
186 199Right-handed alpha
Helix 13
AB4
A
199 238Right-handed alpha
Helix 14
AB5
A
241 247Right-handed alpha
Helix 15
AB6
A
250 263Right-handed alpha
Helix 16
AB7
A
268 270Right-handed 310
Helix 17
AB8
A
271 278Right-handed alpha
Helix 18
AB9
A
280 295Right-handed alpha
Helix 19
AC1
A
295 335Right-handed alpha
Helix 20
AC2
A
343 356Right-handed alpha
Helix 21
AC3
A
385 399Right-handed alpha
Helix 22
AC4
A
430 452Right-handed alpha
Helix 23
AC5
A
465 487Right-handed alpha
Helix 24
AC6
A
487 492Right-handed alpha
Helix 25
AC7
A
494 510Right-handed alpha
Helix 26
AC8
A
529 539Right-handed alpha
Helix 27
AC9
A
540 547Right-handed 310
Helix 28
AD1
A
548 565Right-handed alpha
Helix 29
AD2
A
565 588Right-handed alpha
Helix 30
AD3
A
596 601Right-handed 310
Helix 31
AD4
A
615 628Right-handed alpha
Helix 32
AD5
A
632 644Right-handed alpha
Helix 33
AD6
A
645 647Right-handed 310
Helix 34
AD7
A
648 660Right-handed alpha
Helix 35
AD8
A
662 686Right-handed alpha
Helix 36
AD9
B
21 28Right-handed alpha
Helix 37
AE1
B
29 43Right-handed alpha
Helix 38
AE2
B
48 53Right-handed alpha
Helix 39
AE3
B
57 70Right-handed alpha
Helix 40
AE4
B
70 84Right-handed alpha
Helix 41
AE5
B
85 88Right-handed 310
Helix 42
AE6
B
90 95Right-handed alpha
Helix 43
AE7
B
116 137Right-handed alpha
Helix 44
AE8
B
138 141Right-handed 310
Helix 45
AE9
B
143 148Right-handed alpha
Helix 46
AF1
B
150 172Right-handed alpha
Helix 47
AF2
B
186 199Right-handed alpha
Helix 48
AF3
B
199 238Right-handed alpha
Helix 49
AF4
B
241 247Right-handed alpha
Helix 50
AF5
B
250 263Right-handed alpha
Helix 51
AF6
B
268 270Right-handed 310
Helix 52
AF7
B
271 278Right-handed alpha
Helix 53
AF8
B
281 295Right-handed alpha
Helix 54
AF9
B
295 335Right-handed alpha
Helix 55
AG1
B
343 356Right-handed alpha
Helix 56
AG2
B
384 398Right-handed alpha
Helix 57
AG3
B
430 452Right-handed alpha
Helix 58
AG4
B
465 487Right-handed alpha
Helix 59
AG5
B
487 492Right-handed alpha
Helix 60
AG6
B
494 510Right-handed alpha
Helix 61
AG7
B
529 539Right-handed alpha
Helix 62
AG8
B
540 547Right-handed 310
Helix 63
AG9
B
548 565Right-handed alpha
Helix 64
AH1
B
565 588Right-handed alpha
Helix 65
AH2
B
597 601Right-handed 310
Helix 66
AH3
B
615 628Right-handed alpha
Helix 67
AH4
B
632 644Right-handed alpha
Helix 68
AH5
B
645 647Right-handed 310
Helix 69
AH6
B
648 660Right-handed alpha
Helix 70
AH7
B
662 686Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 7TDF.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
383 384anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il