Analysis of interatomic Contacts of Structural Units in PDB entry:
7TDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TDM entry

There are 4 chains in PDB entry 7TDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5PRO 186
B
 LYS 197ARG 324
H
 GLU 27PRO 252
L
 ASP 26GLU 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7TDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
74 98Right-handed alpha
Helix 3
AA3
A
110 145Right-handed alpha
Helix 4
AA4
A
146 148Right-handed 310
Helix 5
AA5
A
161 182Right-handed alpha
Helix 6
AA6
B
211 218Right-handed alpha
Helix 7
AA7
H
224 231Right-handed alpha
Helix 8
AA8
L
82 85Right-handed 310
Helix 9
AA9
L
147 154Right-handed alpha
Helix 10
AB1
L
209 215Right-handed alpha
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There are 13 sheets in PDB entry 7TDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
44 48anti-parallel
Strand 3
A
52 55anti-parallel
Strand 4
A
64 66anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
238 243parallel
Strand 3
B
295 302anti-parallel
Strand 4
B
259 265anti-parallel
Strand 5
B
273 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
313 319anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
285 290anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
30 33first strand
Strand 2
H
43 50anti-parallel
Strand 3
H
104 110anti-parallel
Strand 4
H
94 99anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
84 86first strand
Strand 2
H
71 77anti-parallel
Strand 3
H
60 65anti-parallel
Strand 4
H
118 124anti-parallel
Strand 5
H
146 148anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
159 163first strand
Strand 2
H
175 184anti-parallel
Strand 3
H
215 223anti-parallel
Strand 4
H
202 204anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
190 192first strand
Strand 2
H
233 238anti-parallel
Strand 3
H
246 250anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 37first strand
Strand 2
L
129 131parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
44 49first strand
Strand 2
L
95 100anti-parallel
Strand 3
L
87 89anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
78 79first strand
Strand 2
L
70 74anti-parallel
Strand 3
L
58 62anti-parallel
Strand 4
L
112 115anti-parallel
Strand 5
L
123 124anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
140 144first strand
Strand 2
L
155 163anti-parallel
Strand 3
L
200 208anti-parallel
Strand 4
L
186 189anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
174 175first strand
Strand 2
L
180 181anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
217 221first strand
Strand 2
L
232 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il