Analysis of interatomic Contacts of Structural Units in PDB entry:
7TDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TDN entry

There are 4 chains in PDB entry 7TDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5PRO 186
B
 ILE 199LEU 321
H
 GLU 27PRO 252
L
 ASP 26GLU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 7TDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
74 98Right-handed alpha
Helix 3
AA3
A
110 149Right-handed alpha
Helix 4
AA4
A
161 184Right-handed alpha
Helix 5
AA5
B
211 217Right-handed alpha
Helix 6
AA6
H
113 117Right-handed 310
Helix 7
AA7
H
224 231Right-handed alpha
Helix 8
AA8
H
240 243Right-handed 310
Helix 9
AA9
L
148 155Right-handed alpha
Helix 10
AB1
L
210 216Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 7TDN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
44 48anti-parallel
Strand 3
A
52 56anti-parallel
Strand 4
A
62 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 210first strand
Strand 2
B
238 244parallel
Strand 3
B
294 302anti-parallel
Strand 4
B
259 265anti-parallel
Strand 5
B
273 277anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
251 255anti-parallel
Strand 4
B
285 289anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
31 34first strand
Strand 2
H
43 49anti-parallel
Strand 3
H
104 110anti-parallel
Strand 4
H
94 99anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
36 38first strand
Strand 2
H
146 150parallel
Strand 3
H
118 126anti-parallel
Strand 4
H
60 65anti-parallel
Strand 5
H
71 77anti-parallel
Strand 6
H
84 86anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
36 38first strand
Strand 2
H
146 150parallel
Strand 3
H
118 126anti-parallel
Strand 4
H
139 140anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
159 163first strand
Strand 2
H
176 184anti-parallel
Strand 3
H
215 222anti-parallel
Strand 4
H
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
190 192first strand
Strand 2
H
234 239anti-parallel
Strand 3
H
244 249anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 37first strand
Strand 2
L
129 132parallel
Strand 3
L
110 115anti-parallel
Strand 4
L
58 62anti-parallel
Strand 5
L
70 74anti-parallel
Strand 6
L
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 37first strand
Strand 2
L
129 132parallel
Strand 3
L
110 115anti-parallel
Strand 4
L
124 125anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
44 49first strand
Strand 2
L
95 100anti-parallel
Strand 3
L
88 91anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
141 145first strand
Strand 2
L
156 166anti-parallel
Strand 3
L
200 209anti-parallel
Strand 4
L
187 190anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
181 182first strand
Strand 2
L
174 177anti-parallel
Strand 3
L
219 222anti-parallel
Strand 4
L
233 236anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il