Analysis of interatomic Contacts of Structural Units in PDB entry:
7TDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TDO entry

There are 6 chains in PDB entry 7TDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 158GLU 603
B
 VAL 158GLU 603
C
 VAL 158GLU 603
D
 VAL 158GLU 603
E
 VAL 158GLU 603
F
 VAL 158GLU 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are102 helices in PDB entry 7TDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
159 163Right-handed 310
Helix 2
AA2
A
174 180Right-handed alpha
Helix 3
AA3
A
206 218Right-handed alpha
Helix 4
AA4
A
236 252Right-handed alpha
Helix 5
AA5
A
261 266Right-handed alpha
Helix 6
AA6
A
282 294Right-handed alpha
Helix 7
AA7
A
313 318Right-handed 310
Helix 8
AA8
A
332 344Right-handed alpha
Helix 9
AA9
A
354 361Right-handed alpha
Helix 10
AB1
A
366 385Right-handed alpha
Helix 11
AB2
A
390 403Right-handed alpha
Helix 12
AB3
A
416 434Right-handed alpha
Helix 13
AB4
A
474 480Right-handed alpha
Helix 14
AB5
A
482 490Right-handed alpha
Helix 15
AB6
A
546 575Right-handed alpha
Helix 16
AB7
A
576 587Right-handed alpha
Helix 17
AB8
A
594 602Right-handed alpha
Helix 18
AB9
B
159 163Right-handed 310
Helix 19
AC1
B
174 180Right-handed alpha
Helix 20
AC2
B
206 218Right-handed alpha
Helix 21
AC3
B
236 252Right-handed alpha
Helix 22
AC4
B
261 266Right-handed alpha
Helix 23
AC5
B
282 294Right-handed alpha
Helix 24
AC6
B
313 318Right-handed 310
Helix 25
AC7
B
332 344Right-handed alpha
Helix 26
AC8
B
354 361Right-handed alpha
Helix 27
AC9
B
366 385Right-handed alpha
Helix 28
AD1
B
390 403Right-handed alpha
Helix 29
AD2
B
416 434Right-handed alpha
Helix 30
AD3
B
474 480Right-handed alpha
Helix 31
AD4
B
482 490Right-handed alpha
Helix 32
AD5
B
546 575Right-handed alpha
Helix 33
AD6
B
576 587Right-handed alpha
Helix 34
AD7
B
594 602Right-handed alpha
Helix 35
AD8
C
159 163Right-handed 310
Helix 36
AD9
C
174 180Right-handed alpha
Helix 37
AE1
C
206 218Right-handed alpha
Helix 38
AE2
C
236 252Right-handed alpha
Helix 39
AE3
C
261 266Right-handed alpha
Helix 40
AE4
C
282 294Right-handed alpha
Helix 41
AE5
C
313 318Right-handed 310
Helix 42
AE6
C
332 344Right-handed alpha
Helix 43
AE7
C
354 361Right-handed alpha
Helix 44
AE8
C
366 385Right-handed alpha
Helix 45
AE9
C
390 403Right-handed alpha
Helix 46
AF1
C
416 434Right-handed alpha
Helix 47
AF2
C
474 480Right-handed alpha
Helix 48
AF3
C
482 490Right-handed alpha
Helix 49
AF4
C
546 575Right-handed alpha
Helix 50
AF5
C
576 587Right-handed alpha
Helix 51
AF6
C
594 602Right-handed alpha
Helix 52
AF7
D
159 163Right-handed 310
Helix 53
AF8
D
174 180Right-handed alpha
Helix 54
AF9
D
206 218Right-handed alpha
Helix 55
AG1
D
236 252Right-handed alpha
Helix 56
AG2
D
261 266Right-handed alpha
Helix 57
AG3
D
282 294Right-handed alpha
Helix 58
AG4
D
313 318Right-handed 310
Helix 59
AG5
D
332 344Right-handed alpha
Helix 60
AG6
D
354 361Right-handed alpha
Helix 61
AG7
D
366 385Right-handed alpha
Helix 62
AG8
D
390 403Right-handed alpha
Helix 63
AG9
D
416 434Right-handed alpha
Helix 64
AH1
D
474 480Right-handed alpha
Helix 65
AH2
D
482 490Right-handed alpha
Helix 66
AH3
D
546 575Right-handed alpha
Helix 67
AH4
D
576 587Right-handed alpha
Helix 68
AH5
D
594 602Right-handed alpha
Helix 69
AH6
E
159 163Right-handed 310
Helix 70
AH7
E
174 180Right-handed alpha
Helix 71
AH8
E
206 218Right-handed alpha
Helix 72
AH9
E
236 252Right-handed alpha
Helix 73
AI1
E
261 266Right-handed alpha
Helix 74
AI2
E
282 294Right-handed alpha
Helix 75
AI3
E
313 318Right-handed 310
Helix 76
AI4
E
332 344Right-handed alpha
Helix 77
AI5
E
354 361Right-handed alpha
Helix 78
AI6
E
366 385Right-handed alpha
Helix 79
AI7
E
390 403Right-handed alpha
Helix 80
AI8
E
416 434Right-handed alpha
Helix 81
AI9
E
474 480Right-handed alpha
Helix 82
AJ1
E
482 490Right-handed alpha
Helix 83
AJ2
E
546 575Right-handed alpha
Helix 84
AJ3
E
576 587Right-handed alpha
Helix 85
AJ4
E
594 602Right-handed alpha
Helix 86
AJ5
F
159 163Right-handed 310
Helix 87
AJ6
F
174 180Right-handed alpha
Helix 88
AJ7
F
206 218Right-handed alpha
Helix 89
AJ8
F
236 252Right-handed alpha
Helix 90
AJ9
F
261 266Right-handed alpha
Helix 91
AK1
F
282 294Right-handed alpha
Helix 92
AK2
F
313 318Right-handed 310
Helix 93
AK3
F
332 344Right-handed alpha
Helix 94
AK4
F
354 361Right-handed alpha
Helix 95
AK5
F
366 385Right-handed alpha
Helix 96
AK6
F
390 403Right-handed alpha
Helix 97
AK7
F
416 434Right-handed alpha
Helix 98
AK8
F
474 480Right-handed alpha
Helix 99
AK9
F
482 490Right-handed alpha
Helix 100
AL1
F
546 575Right-handed alpha
Helix 101
AL2
F
576 587Right-handed alpha
Helix 102
AL3
F
594 602Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 7TDO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
255 260parallel
Strand 3
A
300 306parallel
Strand 4
A
196 200parallel
Strand 5
A
324 327parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 458first strand
Strand 2
A
440 444anti-parallel
Strand 3
A
591 593anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 226first strand
Strand 2
B
255 260parallel
Strand 3
B
300 306parallel
Strand 4
B
196 200parallel
Strand 5
B
324 327parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 458first strand
Strand 2
B
440 444anti-parallel
Strand 3
B
591 593anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 226first strand
Strand 2
C
255 260parallel
Strand 3
C
300 306parallel
Strand 4
C
196 200parallel
Strand 5
C
324 327parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
455 458first strand
Strand 2
C
440 444anti-parallel
Strand 3
C
591 593anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
222 226first strand
Strand 2
D
255 260parallel
Strand 3
D
300 306parallel
Strand 4
D
196 200parallel
Strand 5
D
324 327parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
455 458first strand
Strand 2
D
440 444anti-parallel
Strand 3
D
591 593anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
222 226first strand
Strand 2
E
255 260parallel
Strand 3
E
300 306parallel
Strand 4
E
196 200parallel
Strand 5
E
324 327parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
455 458first strand
Strand 2
E
440 444anti-parallel
Strand 3
E
591 593anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
222 226first strand
Strand 2
F
255 260parallel
Strand 3
F
300 306parallel
Strand 4
F
196 200parallel
Strand 5
F
324 327parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
455 458first strand
Strand 2
F
440 444anti-parallel
Strand 3
F
591 593anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il