Analysis of interatomic Contacts of Structural Units in PDB entry:
7TDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TDT entry

There is 1 chain in PDB entry 7TDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 3PHE 2220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 7TDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 21Right-handed alpha
Helix 2
AA2
A
23 46Right-handed alpha
Helix 3
AA3
A
65 75Right-handed alpha
Helix 4
AA4
A
86 90Right-handed 310
Helix 5
AA5
A
100 117Right-handed alpha
Helix 6
AA6
A
121 135Right-handed alpha
Helix 7
AA7
A
200 210Right-handed alpha
Helix 8
AA8
A
215 222Right-handed alpha
Helix 9
AA9
A
230 242Right-handed alpha
Helix 10
AB1
A
243 245Right-handed 310
Helix 11
AB2
A
251 276Right-handed alpha
Helix 12
AB3
A
276 289Right-handed alpha
Helix 13
AB4
A
298 309Right-handed alpha
Helix 14
AB5
A
352 365Right-handed alpha
Helix 15
AB6
A
368 380Right-handed alpha
Helix 16
AB7
A
389 405Right-handed alpha
Helix 17
AB8
A
408 429Right-handed alpha
Helix 18
AB9
A
430 440Right-handed alpha
Helix 19
AC1
A
444 454Right-handed alpha
Helix 20
AC2
A
461 467Right-handed alpha
Helix 21
AC3
A
483 504Right-handed alpha
Helix 22
AC4
A
515 528Right-handed alpha
Helix 23
AC5
A
559 563Right-handed 310
Helix 24
AC6
A
586 591Right-handed alpha
Helix 25
AC7
A
592 610Right-handed alpha
Helix 26
AC8
A
630 665Right-handed alpha
Helix 27
AC9
A
666 674Right-handed alpha
Helix 28
AD1
A
677 706Right-handed alpha
Helix 29
AD2
A
714 737Right-handed alpha
Helix 30
AD3
A
742 759Right-handed alpha
Helix 31
AD4
A
759 768Right-handed alpha
Helix 32
AD5
A
772 780Right-handed alpha
Helix 33
AD6
A
782 800Right-handed alpha
Helix 34
AD7
A
820 845Right-handed alpha
Helix 35
AD8
A
939 948Right-handed alpha
Helix 36
AD9
A
968 975Right-handed alpha
Helix 37
AE1
A
991 1002Right-handed alpha
Helix 38
AE2
A
1005 1019Right-handed alpha
Helix 39
AE3
A
1021 1028Right-handed alpha
Helix 40
AE4
A
1037 1047Right-handed alpha
Helix 41
AE5
A
1063 1079Right-handed alpha
Helix 42
AE6
A
1091 1097Right-handed alpha
Helix 43
AE7
A
1114 1123Right-handed alpha
Helix 44
AE8
A
1180 1191Right-handed alpha
Helix 45
AE9
A
1214 1232Right-handed alpha
Helix 46
AF1
A
1243 1252Right-handed alpha
Helix 47
AF2
A
1323 1342Right-handed alpha
Helix 48
AF3
A
1343 1368Right-handed alpha
Helix 49
AF4
A
1400 1409Right-handed alpha
Helix 50
AF5
A
1446 1451Right-handed alpha
Helix 51
AF6
A
1505 1524Right-handed alpha
Helix 52
AF7
A
1547 1561Right-handed alpha
Helix 53
AF8
A
1569 1584Right-handed alpha
Helix 54
AF9
A
1600 1618Right-handed alpha
Helix 55
AG1
A
1639 1648Right-handed alpha
Helix 56
AG2
A
1651 1666Right-handed alpha
Helix 57
AG3
A
1667 1681Right-handed alpha
Helix 58
AG4
A
1684 1691Right-handed alpha
Helix 59
AG5
A
1694 1724Right-handed alpha
Helix 60
AG6
A
1734 1753Right-handed alpha
Helix 61
AG7
A
1755 1760Right-handed alpha
Helix 62
AG8
A
1765 1788Right-handed alpha
Helix 63
AG9
A
1805 1809Right-handed 310
Helix 64
AH1
A
1812 1838Right-handed alpha
Helix 65
AH2
A
1849 1874Right-handed alpha
Helix 66
AH3
A
2002 2013Right-handed alpha
Helix 67
AH4
A
2020 2033Right-handed alpha
Helix 68
AH5
A
2046 2059Right-handed alpha
Helix 69
AH6
A
2078 2094Right-handed alpha
Helix 70
AH7
A
2103 2111Right-handed alpha
Helix 71
AH8
A
2127 2135Right-handed alpha
Helix 72
AH9
A
2148 2150Right-handed 310
Helix 73
AI1
A
2151 2163Right-handed alpha
Helix 74
AI2
A
2185 2202Right-handed alpha
Helix 75
AI3
A
2214 2220Right-handed alpha
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There are 11 sheets in PDB entry 7TDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
627 629anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
616 621anti-parallel
Strand 3
A
1589 1594parallel
Strand 4
A
1534 1536anti-parallel
Strand 5
A
1390 1392parallel
Strand 6
A
1495 1499parallel
Strand 7
A
1489 1492anti-parallel
Strand 8
A
1435 1437anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
145 147anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
165 167anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
534 537parallel
Strand 3
A
551 557anti-parallel
Strand 4
A
1628 1631parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 906first strand
Strand 2
A
921 923anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
928 929first strand
Strand 2
A
1084 1087parallel
Strand 3
A
1054 1057parallel
Strand 4
A
977 978parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
932 933first strand
Strand 2
A
1101 1104parallel
Strand 3
A
1109 1113anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1195 1200first strand
Strand 2
A
1203 1208anti-parallel
Strand 3
A
1126 1130anti-parallel
Strand 4
A
1237 1240anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2067 2068first strand
Strand 2
A
2098 2099parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2171 2172first strand
Strand 2
A
2175 2178anti-parallel
Strand 3
A
2140 2144anti-parallel
Strand 4
A
2205 2209anti-parallel
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