Analysis of interatomic Contacts of Structural Units in PDB entry:
7TEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TEM entry

There are 2 chains in PDB entry 7TEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 21GLN 424
B
 ALA 20GLN 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7TEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 31Right-handed alpha
Helix 2
AA2
A
68 86Right-handed alpha
Helix 3
AA3
A
87 104Right-handed alpha
Helix 4
AA4
A
133 154Right-handed alpha
Helix 5
AA5
A
154 176Right-handed alpha
Helix 6
AA6
A
194 197Right-handed 310
Helix 7
AA7
A
198 216Right-handed alpha
Helix 8
AA8
A
218 235Right-handed alpha
Helix 9
AA9
A
261 274Right-handed alpha
Helix 10
AB1
A
275 296Right-handed alpha
Helix 11
AB2
A
322 341Right-handed alpha
Helix 12
AB3
A
342 354Right-handed alpha
Helix 13
AB4
A
355 358Right-handed 310
Helix 14
AB5
A
389 406Right-handed alpha
Helix 15
AB6
A
406 419Right-handed alpha
Helix 16
AB7
B
25 31Right-handed alpha
Helix 17
AB8
B
68 86Right-handed alpha
Helix 18
AB9
B
87 104Right-handed alpha
Helix 19
AC1
B
133 154Right-handed alpha
Helix 20
AC2
B
154 176Right-handed alpha
Helix 21
AC3
B
194 197Right-handed 310
Helix 22
AC4
B
198 216Right-handed alpha
Helix 23
AC5
B
218 235Right-handed alpha
Helix 24
AC6
B
261 274Right-handed alpha
Helix 25
AC7
B
275 296Right-handed alpha
Helix 26
AC8
B
322 341Right-handed alpha
Helix 27
AC9
B
342 354Right-handed alpha
Helix 28
AD1
B
355 358Right-handed 310
Helix 29
AD2
B
389 405Right-handed alpha
Helix 30
AD3
B
406 419Right-handed alpha
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There are 11 sheets in PDB entry 7TEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
41 46anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
114 115anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
188 191anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
301 307anti-parallel
Strand 3
A
310 317anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
383 385anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
42 46anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
57 58anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
114 115anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
188 191anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 256first strand
Strand 2
B
301 307anti-parallel
Strand 3
B
310 317anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 380first strand
Strand 2
B
383 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il