Analysis of interatomic Contacts of Structural Units in PDB entry:
7TFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TFJ entry

There are 9 chains in PDB entry 7TFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 292	ARG 691
B	THR 4	ALA 323
C	GLU 6	THR 335
D	ALA 23	LEU 353
E	MET 1	LEU 353
F	ALA -1	ASP 256
G	ALA -1	ASN 255
H	MSE 1	PHE 254
I	T 9	T 13

There are107 helices in PDB entry 7TFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	297	302	Right-handed alpha
Helix 2	AA2	A	306	310	Right-handed 310
Helix 3	AA3	A	313	326	Right-handed alpha
Helix 4	AA4	A	326	333	Right-handed alpha
Helix 5	AA5	A	358	370	Right-handed alpha
Helix 6	AA6	A	384	390	Right-handed alpha
Helix 7	AA7	A	393	397	Right-handed 310
Helix 8	AA8	A	401	406	Right-handed alpha
Helix 9	AA9	A	425	429	Right-handed 310
Helix 10	AB1	A	436	446	Right-handed alpha
Helix 11	AB2	A	463	467	Right-handed 310
Helix 12	AB3	A	479	494	Right-handed alpha
Helix 13	AB4	A	501	511	Right-handed alpha
Helix 14	AB5	A	513	528	Right-handed alpha
Helix 15	AB6	A	535	543	Right-handed alpha
Helix 16	AB7	A	550	559	Right-handed alpha
Helix 17	AB8	A	565	572	Right-handed alpha
Helix 18	AB9	A	573	584	Right-handed alpha
Helix 19	AC1	A	587	595	Right-handed alpha
Helix 20	AC2	A	609	632	Right-handed alpha
Helix 21	AC3	A	637	639	Right-handed 310
Helix 22	AC4	A	640	649	Right-handed alpha
Helix 23	AC5	A	649	654	Right-handed alpha
Helix 24	AC6	A	668	691	Right-handed alpha
Helix 25	AC7	B	10	15	Right-handed alpha
Helix 26	AC8	B	26	40	Right-handed alpha
Helix 27	AC9	B	55	67	Right-handed alpha
Helix 28	AD1	B	70	74	Right-handed alpha
Helix 29	AD2	B	85	99	Right-handed alpha
Helix 30	AD3	B	116	119	Right-handed 310
Helix 31	AD4	B	120	134	Right-handed alpha
Helix 32	AD5	B	151	158	Right-handed alpha
Helix 33	AD6	B	167	182	Right-handed alpha
Helix 34	AD7	B	187	199	Right-handed alpha
Helix 35	AD8	B	201	216	Right-handed alpha
Helix 36	AD9	B	220	228	Right-handed alpha
Helix 37	AE1	B	231	242	Right-handed alpha
Helix 38	AE2	B	244	256	Right-handed alpha
Helix 39	AE3	B	262	277	Right-handed alpha
Helix 40	AE4	B	281	302	Right-handed alpha
Helix 41	AE5	B	305	321	Right-handed alpha
Helix 42	AE6	C	14	19	Right-handed alpha
Helix 43	AE7	C	31	44	Right-handed alpha
Helix 44	AE8	C	58	71	Right-handed alpha
Helix 45	AE9	C	74	78	Right-handed alpha
Helix 46	AF1	C	89	103	Right-handed alpha
Helix 47	AF2	C	123	137	Right-handed alpha
Helix 48	AF3	C	154	161	Right-handed alpha
Helix 49	AF4	C	170	186	Right-handed alpha
Helix 50	AF5	C	190	202	Right-handed alpha
Helix 51	AF6	C	204	219	Right-handed alpha
Helix 52	AF7	C	228	237	Right-handed alpha
Helix 53	AF8	C	240	254	Right-handed alpha
Helix 54	AF9	C	255	271	Right-handed alpha
Helix 55	AG1	C	273	288	Right-handed alpha
Helix 56	AG2	C	292	312	Right-handed alpha
Helix 57	AG3	C	315	333	Right-handed alpha
Helix 58	AG4	D	26	31	Right-handed alpha
Helix 59	AG5	D	35	39	Right-handed 310
Helix 60	AG6	D	42	55	Right-handed alpha
Helix 61	AG7	D	70	83	Right-handed alpha
Helix 62	AG8	D	87	91	Right-handed alpha
Helix 63	AG9	D	102	116	Right-handed alpha
Helix 64	AH1	D	122	129	Right-handed alpha
Helix 65	AH2	D	142	145	Right-handed 310
Helix 66	AH3	D	146	160	Right-handed alpha
Helix 67	AH4	D	177	184	Right-handed alpha
Helix 68	AH5	D	197	209	Right-handed alpha
Helix 69	AH6	D	215	224	Right-handed alpha
Helix 70	AH7	D	227	246	Right-handed alpha
Helix 71	AH8	D	252	260	Right-handed alpha
Helix 72	AH9	D	264	277	Right-handed alpha
Helix 73	AI1	D	279	294	Right-handed alpha
Helix 74	AI2	D	296	309	Right-handed alpha
Helix 75	AI3	D	315	335	Right-handed alpha
Helix 76	AI4	D	338	353	Right-handed alpha
Helix 77	AI5	E	3	8	Right-handed alpha
Helix 78	AI6	E	19	32	Right-handed alpha
Helix 79	AI7	E	48	61	Right-handed alpha
Helix 80	AI8	E	105	119	Right-handed alpha
Helix 81	AI9	E	142	146	Right-handed 310
Helix 82	AJ1	E	147	161	Right-handed alpha
Helix 83	AJ2	E	178	185	Right-handed alpha
Helix 84	AJ3	E	194	209	Right-handed alpha
Helix 85	AJ4	E	216	227	Right-handed alpha
Helix 86	AJ5	E	229	244	Right-handed alpha
Helix 87	AJ6	E	257	273	Right-handed alpha
Helix 88	AJ7	E	275	292	Right-handed alpha
Helix 89	AJ8	E	295	308	Right-handed alpha
Helix 90	AJ9	E	314	334	Right-handed alpha
Helix 91	AK1	E	339	353	Right-handed alpha
Helix 92	AK2	F	9	19	Right-handed alpha
Helix 93	AK3	F	72	80	Right-handed alpha
Helix 94	AK4	F	141	153	Right-handed alpha
Helix 95	AK5	F	190	194	Right-handed 310
Helix 96	AK6	F	209	217	Right-handed alpha
Helix 97	AK7	F	218	221	Right-handed 310
Helix 98	AK8	G	8	19	Right-handed alpha
Helix 99	AK9	G	72	80	Right-handed alpha
Helix 100	AL1	G	141	153	Right-handed alpha
Helix 101	AL2	G	190	194	Right-handed 310
Helix 102	AL3	G	209	217	Right-handed alpha
Helix 103	AL4	H	9	19	Right-handed alpha
Helix 104	AL5	H	72	82	Right-handed alpha
Helix 105	AL6	H	141	155	Right-handed alpha
Helix 106	AL7	H	209	215	Right-handed alpha
Helix 107	AL8	H	216	221	Right-handed 310

There are 15 sheets in PDB entry 7TFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	451	455	parallel
Strand 3	A	419	423	parallel
Strand 4	A	373	377	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	530	531	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	109	114	parallel
Strand 3	B	138	144	parallel
Strand 4	B	45	48	parallel
Strand 5	B	159	162	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	218	219	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	112	116	parallel
Strand 3	C	141	147	parallel
Strand 4	C	49	52	parallel
Strand 5	C	162	165	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	226	227	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	135	140	parallel
Strand 3	D	164	169	parallel
Strand 4	D	61	64	parallel
Strand 5	D	185	188	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	76	first strand
Strand 2	E	82	90	anti-parallel
Strand 3	E	93	96	anti-parallel
Strand 4	E	136	140	parallel
Strand 5	E	165	170	parallel
Strand 6	E	39	42	parallel
Strand 7	E	186	189	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	98	104	anti-parallel
Strand 5	F	112	117	anti-parallel
Strand 6	H	176	182	anti-parallel
Strand 7	H	166	172	anti-parallel
Strand 8	H	157	163	anti-parallel
Strand 9	H	203	208	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	245	250	anti-parallel
Strand 6	F	233	240	anti-parallel
Strand 7	F	224	230	anti-parallel
Strand 8	F	135	140	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	208	first strand
Strand 2	F	157	163	anti-parallel
Strand 3	F	166	170	anti-parallel
Strand 4	F	179	182	anti-parallel
Strand 5	G	110	117	anti-parallel
Strand 6	G	98	104	anti-parallel
Strand 7	G	87	91	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	30	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	244	250	anti-parallel
Strand 6	G	233	240	anti-parallel
Strand 7	G	224	230	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	199	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	158	first strand
Strand 2	G	207	208	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	172	first strand
Strand 2	G	177	182	anti-parallel
Strand 3	H	111	117	anti-parallel
Strand 4	H	98	104	anti-parallel
Strand 5	H	87	92	anti-parallel
Strand 6	H	2	5	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	25	31	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	245	250	anti-parallel
Strand 6	H	235	240	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TFJ