Analysis of interatomic Contacts of Structural Units in PDB entry:
7THM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7THM entry

There are 5 chains in PDB entry 7THM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	HIS 928
B	ALA 81	ASN 192
C	LYS 7	VAL 58
D	THR 84	LEU 189
G	ASN 1	LEU 106

There are 51 helices in PDB entry 7THM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed alpha
Helix 2	AA2	A	76	91	Right-handed alpha
Helix 3	AA3	A	123	133	Right-handed alpha
Helix 4	AA4	A	139	149	Right-handed alpha
Helix 5	AA5	A	153	159	Right-handed 310
Helix 6	AA6	A	169	176	Right-handed alpha
Helix 7	AA7	A	178	200	Right-handed alpha
Helix 8	AA8	A	206	210	Right-handed 310
Helix 9	AA9	A	234	242	Right-handed alpha
Helix 10	AB1	A	242	248	Right-handed alpha
Helix 11	AB2	A	252	256	Right-handed 310
Helix 12	AB3	A	275	287	Right-handed alpha
Helix 13	AB4	A	297	301	Right-handed 310
Helix 14	AB5	A	303	318	Right-handed alpha
Helix 15	AB6	A	369	377	Right-handed alpha
Helix 16	AB7	A	377	384	Right-handed alpha
Helix 17	AB8	A	416	426	Right-handed alpha
Helix 18	AB9	A	448	454	Right-handed alpha
Helix 19	AC1	A	455	459	Right-handed 310
Helix 20	AC2	A	465	480	Right-handed alpha
Helix 21	AC3	A	481	483	Right-handed 310
Helix 22	AC4	A	503	508	Right-handed alpha
Helix 23	AC5	A	511	517	Right-handed alpha
Helix 24	AC6	A	525	532	Right-handed alpha
Helix 25	AC7	A	561	581	Right-handed alpha
Helix 26	AC8	A	596	606	Right-handed alpha
Helix 27	AC9	A	621	626	Right-handed alpha
Helix 28	AD1	A	627	639	Right-handed alpha
Helix 29	AD2	A	647	663	Right-handed alpha
Helix 30	AD3	A	686	710	Right-handed alpha
Helix 31	AD4	A	718	733	Right-handed alpha
Helix 32	AD5	A	738	752	Right-handed alpha
Helix 33	AD6	A	767	774	Right-handed alpha
Helix 34	AD7	A	778	791	Right-handed alpha
Helix 35	AD8	A	795	799	Right-handed 310
Helix 36	AD9	A	833	843	Right-handed alpha
Helix 37	AE1	A	856	867	Right-handed alpha
Helix 38	AE2	A	868	872	Right-handed 310
Helix 39	AE3	A	874	891	Right-handed alpha
Helix 40	AE4	A	918	924	Right-handed alpha
Helix 41	AE5	B	82	94	Right-handed alpha
Helix 42	AE6	B	99	109	Right-handed alpha
Helix 43	AE7	B	118	124	Right-handed alpha
Helix 44	AE8	B	134	142	Right-handed alpha
Helix 45	AE9	B	176	180	Right-handed 310
Helix 46	AF1	C	8	17	Right-handed alpha
Helix 47	AF2	C	34	41	Right-handed alpha
Helix 48	AF3	C	47	58	Right-handed alpha
Helix 49	AF4	D	85	99	Right-handed alpha
Helix 50	AF5	D	100	111	Right-handed alpha
Helix 51	AF6	G	97	106	Right-handed alpha

There are 15 sheets in PDB entry 7THM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	56	58	anti-parallel
Strand 3	A	66	69	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	43	49	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	113	115	anti-parallel
Strand 3	A	100	102	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	232	233	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	343	first strand
Strand 2	A	329	331	anti-parallel
Strand 3	B	114	116	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	335	first strand
Strand 2	A	338	339	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	353	355	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	390	first strand
Strand 2	B	128	132	parallel
Strand 3	B	184	190	anti-parallel
Strand 4	B	154	160	anti-parallel
Strand 5	B	146	147	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	400	first strand
Strand 2	A	672	675	anti-parallel
Strand 3	A	666	668	anti-parallel
Strand 4	A	539	544	parallel
Strand 5	A	556	559	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	758	first strand
Strand 2	A	761	766	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	820	first strand
Strand 2	A	827	831	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	185	189	anti-parallel
Strand 3	D	155	160	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	152	153	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	33	first strand
Strand 2	G	40	41	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	66	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7THM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7THM