Analysis of interatomic Contacts of Structural Units in PDB entry:
7THQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7THQ entry

There are 4 chains in PDB entry 7THQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLU 505
E	MET 1	ALA 79
A	MET 1	LEU 504
C	MET 1	LEU 77

There are 44 helices in PDB entry 7THQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	15	Right-handed alpha
Helix 2	AA2	B	30	47	Right-handed alpha
Helix 3	AA3	B	62	75	Right-handed alpha
Helix 4	AA4	B	87	99	Right-handed alpha
Helix 5	AA5	B	109	115	Right-handed alpha
Helix 6	AA6	B	134	138	Right-handed 310
Helix 7	AA7	B	175	190	Right-handed alpha
Helix 8	AA8	B	206	218	Right-handed alpha
Helix 9	AA9	B	226	231	Right-handed alpha
Helix 10	AB1	B	232	243	Right-handed alpha
Helix 11	AB2	B	251	262	Right-handed alpha
Helix 12	AB3	B	283	294	Right-handed alpha
Helix 13	AB4	B	410	419	Right-handed alpha
Helix 14	AB5	B	433	437	Right-handed 310
Helix 15	AB6	B	452	462	Right-handed alpha
Helix 16	AB7	B	465	469	Right-handed 310
Helix 17	AB8	B	490	505	Right-handed alpha
Helix 18	AB9	E	2	15	Right-handed alpha
Helix 19	AC1	E	35	37	Right-handed 310
Helix 20	AC2	E	38	50	Right-handed alpha
Helix 21	AC3	E	60	65	Right-handed alpha
Helix 22	AC4	E	66	79	Right-handed alpha
Helix 23	AC5	A	3	15	Right-handed alpha
Helix 24	AC6	A	30	47	Right-handed alpha
Helix 25	AC7	A	62	75	Right-handed alpha
Helix 26	AC8	A	87	99	Right-handed alpha
Helix 27	AC9	A	109	115	Right-handed alpha
Helix 28	AD1	A	134	138	Right-handed 310
Helix 29	AD2	A	175	190	Right-handed alpha
Helix 30	AD3	A	206	219	Right-handed alpha
Helix 31	AD4	A	226	230	Right-handed 310
Helix 32	AD5	A	232	243	Right-handed alpha
Helix 33	AD6	A	251	262	Right-handed alpha
Helix 34	AD7	A	283	294	Right-handed alpha
Helix 35	AD8	A	410	419	Right-handed alpha
Helix 36	AD9	A	433	437	Right-handed 310
Helix 37	AE1	A	452	462	Right-handed alpha
Helix 38	AE2	A	465	469	Right-handed 310
Helix 39	AE3	A	490	502	Right-handed alpha
Helix 40	AE4	C	2	16	Right-handed alpha
Helix 41	AE5	C	38	51	Right-handed alpha
Helix 42	AE6	C	55	59	Right-handed 310
Helix 43	AE7	C	60	65	Right-handed alpha
Helix 44	AE8	C	66	77	Right-handed alpha

There are 14 sheets in PDB entry 7THQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	19	22	anti-parallel
Strand 3	B	221	224	parallel
Strand 4	B	196	199	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	54	58	parallel
Strand 3	B	102	105	parallel
Strand 4	B	122	125	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	161	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	366	367	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	250	first strand
Strand 2	B	274	278	parallel
Strand 3	B	298	303	parallel
Strand 4	B	312	315	anti-parallel
Strand 5	B	331	332	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	353	359	anti-parallel
Strand 3	B	377	385	anti-parallel
Strand 4	B	391	396	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	406	409	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	431	first strand
Strand 2	B	438	445	anti-parallel
Strand 3	B	472	475	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	19	22	anti-parallel
Strand 3	A	221	224	parallel
Strand 4	A	196	199	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	54	58	parallel
Strand 3	A	102	105	parallel
Strand 4	A	122	125	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	161	first strand
Strand 2	A	169	174	anti-parallel
Strand 3	A	366	367	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	274	278	parallel
Strand 3	A	298	303	parallel
Strand 4	A	312	315	anti-parallel
Strand 5	A	331	332	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	353	359	anti-parallel
Strand 3	A	377	385	anti-parallel
Strand 4	A	391	396	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	406	409	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	431	first strand
Strand 2	A	438	445	anti-parallel
Strand 3	A	472	476	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7THQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7THQ