Analysis of interatomic Contacts of Structural Units in PDB entry:
7THV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7THV entry

There are 8 chains in PDB entry 7THV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 291	PRO 780
B	GLN 8	ASN 321
C	ASN 12	ASN 333
D	PRO 26	LEU 353
E	TRP 4	ASP 354
F	MET 1	PHE 254
G	MET 1	ASN 255
H	MET 1	PHE 254

There are113 helices in PDB entry 7THV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	297	302	Right-handed alpha
Helix 2	AA2	A	313	333	Right-handed alpha
Helix 3	AA3	A	358	370	Right-handed alpha
Helix 4	AA4	A	384	391	Right-handed alpha
Helix 5	AA5	A	392	396	Right-handed 310
Helix 6	AA6	A	401	407	Right-handed alpha
Helix 7	AA7	A	425	429	Right-handed 310
Helix 8	AA8	A	435	445	Right-handed alpha
Helix 9	AA9	A	460	467	Right-handed 310
Helix 10	AB1	A	479	494	Right-handed alpha
Helix 11	AB2	A	499	510	Right-handed alpha
Helix 12	AB3	A	513	522	Right-handed alpha
Helix 13	AB4	A	523	526	Right-handed 310
Helix 14	AB5	A	541	547	Right-handed alpha
Helix 15	AB6	A	549	559	Right-handed alpha
Helix 16	AB7	A	565	570	Right-handed alpha
Helix 17	AB8	A	573	583	Right-handed alpha
Helix 18	AB9	A	587	595	Right-handed alpha
Helix 19	AC1	A	609	634	Right-handed alpha
Helix 20	AC2	A	635	639	Right-handed 310
Helix 21	AC3	A	640	649	Right-handed alpha
Helix 22	AC4	A	649	657	Right-handed alpha
Helix 23	AC5	A	668	691	Right-handed alpha
Helix 24	AC6	A	692	694	Right-handed 310
Helix 25	AC7	A	699	715	Right-handed alpha
Helix 26	AC8	A	715	720	Right-handed alpha
Helix 27	AC9	A	724	735	Right-handed alpha
Helix 28	AD1	A	738	748	Right-handed alpha
Helix 29	AD2	A	758	762	Right-handed 310
Helix 30	AD3	A	763	775	Right-handed alpha
Helix 31	AD4	B	10	15	Right-handed alpha
Helix 32	AD5	B	19	23	Right-handed 310
Helix 33	AD6	B	26	40	Right-handed alpha
Helix 34	AD7	B	55	68	Right-handed alpha
Helix 35	AD8	B	69	71	Right-handed 310
Helix 36	AD9	B	85	98	Right-handed alpha
Helix 37	AE1	B	116	119	Right-handed 310
Helix 38	AE2	B	120	134	Right-handed alpha
Helix 39	AE3	B	151	158	Right-handed alpha
Helix 40	AE4	B	167	183	Right-handed alpha
Helix 41	AE5	B	187	199	Right-handed alpha
Helix 42	AE6	B	201	217	Right-handed alpha
Helix 43	AE7	B	220	228	Right-handed alpha
Helix 44	AE8	B	232	242	Right-handed alpha
Helix 45	AE9	B	244	256	Right-handed alpha
Helix 46	AF1	B	262	277	Right-handed alpha
Helix 47	AF2	B	281	301	Right-handed alpha
Helix 48	AF3	B	305	321	Right-handed alpha
Helix 49	AF4	C	14	19	Right-handed alpha
Helix 50	AF5	C	23	27	Right-handed 310
Helix 51	AF6	C	30	44	Right-handed alpha
Helix 52	AF7	C	58	72	Right-handed alpha
Helix 53	AF8	C	74	78	Right-handed alpha
Helix 54	AF9	C	89	103	Right-handed alpha
Helix 55	AG1	C	123	137	Right-handed alpha
Helix 56	AG2	C	154	161	Right-handed alpha
Helix 57	AG3	C	170	184	Right-handed alpha
Helix 58	AG4	C	190	202	Right-handed alpha
Helix 59	AG5	C	204	219	Right-handed alpha
Helix 60	AG6	C	228	237	Right-handed alpha
Helix 61	AG7	C	240	254	Right-handed alpha
Helix 62	AG8	C	255	270	Right-handed alpha
Helix 63	AG9	C	273	286	Right-handed alpha
Helix 64	AH1	C	293	311	Right-handed alpha
Helix 65	AH2	C	315	331	Right-handed alpha
Helix 66	AH3	D	45	53	Right-handed alpha
Helix 67	AH4	D	70	83	Right-handed alpha
Helix 68	AH5	D	102	109	Right-handed alpha
Helix 69	AH6	D	109	116	Right-handed alpha
Helix 70	AH7	D	141	145	Right-handed 310
Helix 71	AH8	D	146	159	Right-handed alpha
Helix 72	AH9	D	177	184	Right-handed alpha
Helix 73	AI1	D	196	209	Right-handed alpha
Helix 74	AI2	D	216	224	Right-handed alpha
Helix 75	AI3	D	228	243	Right-handed alpha
Helix 76	AI4	D	252	261	Right-handed alpha
Helix 77	AI5	D	264	277	Right-handed alpha
Helix 78	AI6	D	279	294	Right-handed alpha
Helix 79	AI7	D	299	311	Right-handed alpha
Helix 80	AI8	D	315	334	Right-handed alpha
Helix 81	AI9	D	338	352	Right-handed alpha
Helix 82	AJ1	E	4	9	Right-handed 310
Helix 83	AJ2	E	19	30	Right-handed alpha
Helix 84	AJ3	E	48	61	Right-handed alpha
Helix 85	AJ4	E	62	67	Right-handed 310
Helix 86	AJ5	E	104	117	Right-handed alpha
Helix 87	AJ6	E	147	161	Right-handed alpha
Helix 88	AJ7	E	178	183	Right-handed alpha
Helix 89	AJ8	E	194	209	Right-handed alpha
Helix 90	AJ9	E	216	226	Right-handed alpha
Helix 91	AK1	E	229	242	Right-handed alpha
Helix 92	AK2	E	257	273	Right-handed alpha
Helix 93	AK3	E	275	291	Right-handed alpha
Helix 94	AK4	E	295	310	Right-handed alpha
Helix 95	AK5	E	314	335	Right-handed alpha
Helix 96	AK6	E	337	354	Right-handed alpha
Helix 97	AK7	F	9	19	Right-handed alpha
Helix 98	AK8	F	72	80	Right-handed alpha
Helix 99	AK9	F	141	152	Right-handed alpha
Helix 100	AL1	F	190	194	Right-handed 310
Helix 101	AL2	F	209	216	Right-handed alpha
Helix 102	AL3	F	217	219	Right-handed 310
Helix 103	AL4	G	9	20	Right-handed alpha
Helix 104	AL5	G	72	80	Right-handed alpha
Helix 105	AL6	G	141	152	Right-handed alpha
Helix 106	AL7	G	190	194	Right-handed 310
Helix 107	AL8	G	209	216	Right-handed alpha
Helix 108	AL9	G	217	221	Right-handed 310
Helix 109	AM1	H	8	20	Right-handed alpha
Helix 110	AM2	H	72	80	Right-handed alpha
Helix 111	AM3	H	141	153	Right-handed alpha
Helix 112	AM4	H	208	216	Right-handed alpha
Helix 113	AM5	H	217	221	Right-handed 310

There are 13 sheets in PDB entry 7THV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	377	first strand
Strand 2	A	419	423	parallel
Strand 3	A	451	454	parallel
Strand 4	A	348	352	parallel
Strand 5	A	471	474	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	601	first strand
Strand 2	A	658	660	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	109	114	parallel
Strand 3	B	138	144	parallel
Strand 4	B	45	49	parallel
Strand 5	B	159	163	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	112	116	parallel
Strand 3	C	141	147	parallel
Strand 4	C	49	52	parallel
Strand 5	C	162	165	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	135	139	parallel
Strand 3	D	164	170	parallel
Strand 4	D	61	64	parallel
Strand 5	D	185	188	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	76	first strand
Strand 2	E	82	89	anti-parallel
Strand 3	E	93	96	anti-parallel
Strand 4	E	136	140	parallel
Strand 5	E	165	171	parallel
Strand 6	E	39	42	parallel
Strand 7	E	186	189	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	213	first strand
Strand 2	E	247	248	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	61	first strand
Strand 2	F	2	5	anti-parallel
Strand 3	F	89	92	anti-parallel
Strand 4	F	98	105	anti-parallel
Strand 5	F	108	117	anti-parallel
Strand 6	H	176	182	anti-parallel
Strand 7	H	166	172	anti-parallel
Strand 8	H	158	163	anti-parallel
Strand 9	H	203	207	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	31	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	52	anti-parallel
Strand 5	F	244	250	anti-parallel
Strand 6	F	235	241	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	208	first strand
Strand 2	F	157	163	anti-parallel
Strand 3	F	166	172	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	G	111	117	anti-parallel
Strand 6	G	98	105	anti-parallel
Strand 7	G	86	92	anti-parallel
Strand 8	G	3	6	anti-parallel
Strand 9	G	57	61	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	30	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	244	250	anti-parallel
Strand 6	G	235	241	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	199	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	203	208	first strand
Strand 2	G	157	162	anti-parallel
Strand 3	G	167	172	anti-parallel
Strand 4	G	177	182	anti-parallel
Strand 5	H	111	117	anti-parallel
Strand 6	H	98	105	anti-parallel
Strand 7	H	86	92	anti-parallel
Strand 8	H	2	6	anti-parallel
Strand 9	H	57	62	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	25	30	anti-parallel
Strand 3	H	35	40	anti-parallel
Strand 4	H	46	52	anti-parallel
Strand 5	H	245	250	anti-parallel
Strand 6	H	235	240	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7THV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7THV