Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TJ5 entry

There are 4 chains in PDB entry 7TJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	ALA 415
B	THR 10	ALA 415
C	THR 10	ALA 415
D	THR 10	ALA 415

There are 64 helices in PDB entry 7TJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	36	Right-handed alpha
Helix 2	AA2	A	43	63	Right-handed alpha
Helix 3	AA3	A	81	89	Right-handed alpha
Helix 4	AA4	A	108	112	Right-handed 310
Helix 5	AA5	A	113	123	Right-handed alpha
Helix 6	AA6	A	131	158	Right-handed alpha
Helix 7	AA7	A	165	182	Right-handed alpha
Helix 8	AA8	A	193	224	Right-handed alpha
Helix 9	AA9	A	226	246	Right-handed alpha
Helix 10	AB1	A	249	268	Right-handed alpha
Helix 11	AB2	A	271	276	Right-handed alpha
Helix 12	AB3	A	277	279	Right-handed 310
Helix 13	AB4	A	280	298	Right-handed alpha
Helix 14	AB5	A	306	317	Right-handed alpha
Helix 15	AB6	A	394	402	Right-handed alpha
Helix 16	AB7	A	404	415	Right-handed alpha
Helix 17	AB8	B	11	36	Right-handed alpha
Helix 18	AB9	B	43	63	Right-handed alpha
Helix 19	AC1	B	81	89	Right-handed alpha
Helix 20	AC2	B	108	112	Right-handed 310
Helix 21	AC3	B	113	123	Right-handed alpha
Helix 22	AC4	B	131	158	Right-handed alpha
Helix 23	AC5	B	165	182	Right-handed alpha
Helix 24	AC6	B	193	224	Right-handed alpha
Helix 25	AC7	B	226	246	Right-handed alpha
Helix 26	AC8	B	249	268	Right-handed alpha
Helix 27	AC9	B	271	276	Right-handed alpha
Helix 28	AD1	B	277	279	Right-handed 310
Helix 29	AD2	B	280	298	Right-handed alpha
Helix 30	AD3	B	306	317	Right-handed alpha
Helix 31	AD4	B	394	402	Right-handed alpha
Helix 32	AD5	B	404	415	Right-handed alpha
Helix 33	AD6	C	11	36	Right-handed alpha
Helix 34	AD7	C	43	63	Right-handed alpha
Helix 35	AD8	C	81	89	Right-handed alpha
Helix 36	AD9	C	108	112	Right-handed 310
Helix 37	AE1	C	113	123	Right-handed alpha
Helix 38	AE2	C	131	158	Right-handed alpha
Helix 39	AE3	C	165	182	Right-handed alpha
Helix 40	AE4	C	193	224	Right-handed alpha
Helix 41	AE5	C	226	246	Right-handed alpha
Helix 42	AE6	C	249	268	Right-handed alpha
Helix 43	AE7	C	271	276	Right-handed alpha
Helix 44	AE8	C	277	279	Right-handed 310
Helix 45	AE9	C	280	298	Right-handed alpha
Helix 46	AF1	C	306	317	Right-handed alpha
Helix 47	AF2	C	394	402	Right-handed alpha
Helix 48	AF3	C	404	415	Right-handed alpha
Helix 49	AF4	D	11	36	Right-handed alpha
Helix 50	AF5	D	43	63	Right-handed alpha
Helix 51	AF6	D	81	89	Right-handed alpha
Helix 52	AF7	D	108	112	Right-handed 310
Helix 53	AF8	D	113	123	Right-handed alpha
Helix 54	AF9	D	131	158	Right-handed alpha
Helix 55	AG1	D	165	182	Right-handed alpha
Helix 56	AG2	D	193	224	Right-handed alpha
Helix 57	AG3	D	226	246	Right-handed alpha
Helix 58	AG4	D	249	268	Right-handed alpha
Helix 59	AG5	D	271	276	Right-handed alpha
Helix 60	AG6	D	277	279	Right-handed 310
Helix 61	AG7	D	280	298	Right-handed alpha
Helix 62	AG8	D	306	317	Right-handed alpha
Helix 63	AG9	D	394	402	Right-handed alpha
Helix 64	AH1	D	404	415	Right-handed alpha

There are 8 sheets in PDB entry 7TJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	389	393	anti-parallel
Strand 3	A	337	340	anti-parallel
Strand 4	A	365	366	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	380	383	anti-parallel
Strand 3	A	346	349	anti-parallel
Strand 4	A	356	360	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	389	393	anti-parallel
Strand 3	B	337	340	anti-parallel
Strand 4	B	365	366	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	380	383	anti-parallel
Strand 3	B	346	349	anti-parallel
Strand 4	B	356	360	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	389	393	anti-parallel
Strand 3	C	337	340	anti-parallel
Strand 4	C	365	366	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	380	383	anti-parallel
Strand 3	C	346	349	anti-parallel
Strand 4	C	356	360	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	320	first strand
Strand 2	D	389	393	anti-parallel
Strand 3	D	337	340	anti-parallel
Strand 4	D	365	366	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	380	383	anti-parallel
Strand 3	D	346	349	anti-parallel
Strand 4	D	356	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJ5